Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.89■■□□□ 1.09
CIITAP33076 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CIITAP33076 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CIITAP33076 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.89■■□□□ 1.09
CIITAP33076 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CIITAP33076 AC091390.4-202ENST00000476426 537 ntBASIC21.88■■□□□ 1.09
CIITAP33076 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.88■■□□□ 1.09
CIITAP33076 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.88■■□□□ 1.09
CIITAP33076 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CIITAP33076 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.88■■□□□ 1.09
CIITAP33076 AC079598.2-202ENST00000546624 1451 ntBASIC21.88■■□□□ 1.09
CIITAP33076 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CIITAP33076 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CIITAP33076 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.88■■□□□ 1.09
CIITAP33076 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.87■■□□□ 1.09
CIITAP33076 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
CIITAP33076 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.87■■□□□ 1.09
CIITAP33076 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 AP000692.2-201ENST00000608391 879 ntBASIC21.87■■□□□ 1.09
CIITAP33076 DGCR10-201ENST00000609839 495 ntBASIC21.87■■□□□ 1.09
CIITAP33076 AC011298.2-201ENST00000617989 482 ntBASIC21.87■■□□□ 1.09
CIITAP33076 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.87■■□□□ 1.09
CIITAP33076 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 AL158211.5-201ENST00000623583 2518 ntBASIC21.87■■□□□ 1.09
CIITAP33076 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.87■■□□□ 1.09
CIITAP33076 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CIITAP33076 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.87■■□□□ 1.09
CIITAP33076 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.87■■□□□ 1.09
CIITAP33076 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CIITAP33076 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.87■■□□□ 1.09
CIITAP33076 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
CIITAP33076 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.86■■□□□ 1.09
CIITAP33076 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CIITAP33076 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CIITAP33076 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
CIITAP33076 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.86■■□□□ 1.09
CIITAP33076 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CIITAP33076 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.86■■□□□ 1.09
CIITAP33076 BX088651.1-201ENST00000540551 451 ntBASIC21.86■■□□□ 1.09
CIITAP33076 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.86■■□□□ 1.09
CIITAP33076 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.86■■□□□ 1.09
CIITAP33076 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.86■■□□□ 1.09
CIITAP33076 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.86■■□□□ 1.09
CIITAP33076 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.86■■□□□ 1.09
CIITAP33076 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CIITAP33076 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CIITAP33076 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CIITAP33076 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CIITAP33076 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
CIITAP33076 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.85■■□□□ 1.09
CIITAP33076 UNC93B2-201ENST00000285383 730 ntBASIC21.85■■□□□ 1.09
CIITAP33076 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CIITAP33076 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.85■■□□□ 1.09
CIITAP33076 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CIITAP33076 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CIITAP33076 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CIITAP33076 SDHAP1-207ENST00000440850 2000 ntBASIC21.84■■□□□ 1.09
CIITAP33076 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CIITAP33076 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CIITAP33076 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CIITAP33076 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
CIITAP33076 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CIITAP33076 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.84■■□□□ 1.09
CIITAP33076 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms