Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RNF40O75150 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF40O75150 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
RNF40O75150 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF40O75150 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF40O75150 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RNF40O75150 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.86■□□□□ 0.93
RNF40O75150 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF40O75150 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF40O75150 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF40O75150 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.85■□□□□ 0.93
RNF40O75150 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RNF40O75150 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.85■□□□□ 0.93
RNF40O75150 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 AC005332.8-201ENST00000622750 2735 ntBASIC20.85■□□□□ 0.93
RNF40O75150 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
RNF40O75150 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF40O75150 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF40O75150 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF40O75150 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.93
RNF40O75150 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
RNF40O75150 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 ECEL1P3-201ENST00000427961 737 ntBASIC20.84■□□□□ 0.93
RNF40O75150 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
RNF40O75150 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF40O75150 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF40O75150 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF40O75150 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
RNF40O75150 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF40O75150 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
RNF40O75150 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF40O75150 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.83■□□□□ 0.93
RNF40O75150 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
RNF40O75150 AC011484.1-201ENST00000377652 1995 ntBASIC20.83■□□□□ 0.93
RNF40O75150 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RNF40O75150 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.83■□□□□ 0.93
RNF40O75150 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF40O75150 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF40O75150 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF40O75150 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNF40O75150 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF40O75150 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF40O75150 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
RNF40O75150 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RNF40O75150 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.82■□□□□ 0.92
RNF40O75150 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 AC087633.2-202ENST00000565166 1439 ntBASIC20.82■□□□□ 0.92
RNF40O75150 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
RNF40O75150 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.82■□□□□ 0.92
RNF40O75150 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RNF40O75150 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.82■□□□□ 0.92
RNF40O75150 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
RNF40O75150 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF40O75150 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms