Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.59■□□□□ 0.09
HMGB3O15347 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 GUSBP5-201ENST00000418136 578 ntBASIC15.59■□□□□ 0.09
HMGB3O15347 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.59■□□□□ 0.09
HMGB3O15347 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.59■□□□□ 0.09
HMGB3O15347 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
HMGB3O15347 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.58■□□□□ 0.09
HMGB3O15347 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HMGB3O15347 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
HMGB3O15347 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGB3O15347 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGB3O15347 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.58■□□□□ 0.09
HMGB3O15347 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
HMGB3O15347 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGB3O15347 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HMGB3O15347 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
HMGB3O15347 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HMGB3O15347 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGB3O15347 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.58■□□□□ 0.08
HMGB3O15347 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 TSPY26P-201ENST00000476365 1326 ntBASIC15.58■□□□□ 0.08
HMGB3O15347 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
HMGB3O15347 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.58■□□□□ 0.08
HMGB3O15347 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HMGB3O15347 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HMGB3O15347 AL138781.2-201ENST00000617896 1843 ntBASIC15.57■□□□□ 0.08
HMGB3O15347 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HMGB3O15347 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
HMGB3O15347 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HMGB3O15347 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC15.57■□□□□ 0.08
HMGB3O15347 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC15.57■□□□□ 0.08
HMGB3O15347 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGB3O15347 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
HMGB3O15347 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGB3O15347 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.57■□□□□ 0.08
HMGB3O15347 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGB3O15347 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB3O15347 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.56■□□□□ 0.08
HMGB3O15347 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.56■□□□□ 0.08
HMGB3O15347 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.56■□□□□ 0.08
HMGB3O15347 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC15.56■□□□□ 0.08
HMGB3O15347 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC15.56■□□□□ 0.08
HMGB3O15347 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.56■□□□□ 0.08
HMGB3O15347 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms