Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RN7SKP131-201ENST00000410698 301 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 RPL36AP15-201ENST00000444514 266 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 RPL23AP43-201ENST00000446445 471 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 HMGB3P21-201ENST00000452483 547 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC079804.1-201ENST00000461922 436 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 SIAH1P1-201ENST00000479411 923 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC084878.1-201ENST00000480555 648 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 SCG5-207ENST00000497208 949 ntTSL 5 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC055733.3-201ENST00000505214 523 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC006070.1-201ENST00000508151 193 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC011979.2-201ENST00000527568 352 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC087441.2-201ENST00000529141 262 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC092720.1-203ENST00000563921 550 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 SUB1P3-201ENST00000564581 315 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 OR5AH1P-201ENST00000595968 283 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC011494.1-201ENST00000596454 237 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 RN7SL760P-201ENST00000607344 270 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC006335.3-201ENST00000613408 292 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AL034408.1-201ENST00000637712 664 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 AC091544.5-201ENST00000620192 3815 ntBASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
VPS9D1Q9Y2B5 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 Y_RNA.83-201ENST00000363005 113 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 PKIB-203ENST00000368446 556 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SNORD15A-201ENST00000384214 148 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AL136131.1-201ENST00000406079 803 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC011933.1-201ENST00000413334 321 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 RPS17P17-201ENST00000419392 409 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SNX18P14-201ENST00000429308 574 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC000362.1-201ENST00000433725 425 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SNORD5.1-201ENST00000458800 75 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 FAM74A1-201ENST00000465257 623 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC021205.1-201ENST00000468797 348 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC087879.1-201ENST00000474343 374 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC097263.1-201ENST00000496795 606 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 RNU6-346P-201ENST00000516288 111 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 RPL10P18-201ENST00000519384 309 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AP006587.4-201ENST00000526053 529 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 OR4C1P-201ENST00000530880 937 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SARNP-203ENST00000552080 726 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SULT1C2P1-202ENST00000562418 459 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 RN7SL835P-201ENST00000579920 262 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC068790.3-201ENST00000602988 553 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC020910.3-201ENST00000603701 874 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC133644.2-201ENST00000608142 540 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC093799.2-201ENST00000610062 578 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 AC005344.1-201ENST00000613391 459 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 U2.14-201ENST00000615943 113 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 U6.101-201ENST00000637707 76 ntBASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC7.34□□□□□ -1.23
VPS9D1Q9Y2B5 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
VPS9D1Q9Y2B5 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
VPS9D1Q9Y2B5 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms