RNA–Protein interactions for RNA: ENST00000317716.13

CDHR3-201, Transcript of cadherin related family member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDHR3, Length 3,813 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-201ENST00000317716 NISCHQ9Y2I1 1504 aa14.36□□□□□ -0.11
CDHR3-201ENST00000317716 DCAF8L2P0C7V8 631 aa13.26□□□□□ -0.29
CDHR3-201ENST00000317716 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
CDHR3-201ENST00000317716 ABCC9O60706 1549 aa12.62□□□□□ -0.39
CDHR3-201ENST00000317716 SHROOM4Q9ULL8 1493 aa12.6□□□□□ -0.39
CDHR3-201ENST00000317716 PCGF6Q9BYE7 350 aa12.47□□□□□ -0.41
CDHR3-201ENST00000317716 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
CDHR3-201ENST00000317716 PPARGC1BQ86YN6 1023 aaKnown RBP12.29□□□□□ -0.44
CDHR3-201ENST00000317716 CCDC180Q9P1Z9 1646 aa12.21□□□□□ -0.45
CDHR3-201ENST00000317716 HRCP23327 699 aa12.18□□□□□ -0.46
CDHR3-201ENST00000317716 PABPN1Q86U42 306 aaKnown RBP eCLIP12.17□□□□□ -0.46
CDHR3-201ENST00000317716 FAM9AQ8IZU1 332 aaPredicted RBP11.97□□□□□ -0.49
CDHR3-201ENST00000317716 TTBK1Q5TCY1 1321 aaPredicted RBP11.94□□□□□ -0.5
CDHR3-201ENST00000317716 PELP1Q8IZL8 1130 aaKnown RBP11.92□□□□□ -0.5
CDHR3-201ENST00000317716 ZCCHC6Q5VYS8 1495 aaKnown RBP11.91□□□□□ -0.5
CDHR3-201ENST00000317716 LOC105371045A0A1W2PR82 267 aa11.89□□□□□ -0.51
CDHR3-201ENST00000317716 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
CDHR3-201ENST00000317716 CHIC1Q5VXU3 224 aa11.78□□□□□ -0.52
CDHR3-201ENST00000317716 YTHDC1Q96MU7 727 aaKnown RBP11.78□□□□□ -0.52
CDHR3-201ENST00000317716 RB1CC1Q8TDY2 1594 aa11.72□□□□□ -0.53
CDHR3-201ENST00000317716 CCER1Q8TC90 406 aaPredicted RBP11.69□□□□□ -0.54
CDHR3-201ENST00000317716 TRIM26Q12899 539 aaPredicted RBP11.68□□□□□ -0.54
CDHR3-201ENST00000317716 CENPBP07199 599 aaPredicted RBP11.67□□□□□ -0.54
CDHR3-201ENST00000317716 ZEB1P37275 1124 aaPredicted RBP11.64□□□□□ -0.55
CDHR3-201ENST00000317716 NACADO15069 1562 aa11.64□□□□□ -0.55
CDHR3-201ENST00000317716 SCAF1Q9H7N4 1312 aaKnown RBP11.57□□□□□ -0.56
CDHR3-201ENST00000317716 GTF3C3Q9Y5Q9 886 aa11.54□□□□□ -0.56
CDHR3-201ENST00000317716 TRIM41Q8WV44 630 aa11.54□□□□□ -0.56
CDHR3-201ENST00000317716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.53□□□□□ -0.56
CDHR3-201ENST00000317716 MYT1Q01538 1121 aa11.47□□□□□ -0.57
CDHR3-201ENST00000317716 DCAF1Q9Y4B6 1507 aa11.45□□□□□ -0.58
CDHR3-201ENST00000317716 CECR2Q9BXF3 1484 aa11.44□□□□□ -0.58
CDHR3-201ENST00000317716 RANGAP1P46060 587 aaPredicted RBP11.42□□□□□ -0.58
CDHR3-201ENST00000317716 MYO15BQ96JP2 1530 aa11.42□□□□□ -0.58
CDHR3-201ENST00000317716 DIEXFQ68CQ4 756 aaKnown RBP11.41□□□□□ -0.58
CDHR3-201ENST00000317716 NEUROD1Q13562 356 aa11.39□□□□□ -0.59
CDHR3-201ENST00000317716 ACIN1Q9UKV3 1341 aaKnown RBP11.38□□□□□ -0.59
CDHR3-201ENST00000317716 DNAJC5BQ9UF47 199 aa11.34□□□□□ -0.59
CDHR3-201ENST00000317716 UNC13AQ9UPW8 1703 aa11.25□□□□□ -0.61
CDHR3-201ENST00000317716 HNRNPUL2Q1KMD3 747 aaKnown RBP11.24□□□□□ -0.61
CDHR3-201ENST00000317716 MROH2BQ7Z745 1585 aa11.23□□□□□ -0.61
CDHR3-201ENST00000317716 RSF1Q96T23 1441 aaPredicted RBP11.23□□□□□ -0.61
CDHR3-201ENST00000317716 APLP2Q06481 763 aa11.22□□□□□ -0.61
CDHR3-201ENST00000317716 BICRAQ9NZM4 1560 aa11.22□□□□□ -0.61
CDHR3-201ENST00000317716 UBTFP17480 764 aaKnown RBP11.22□□□□□ -0.61
CDHR3-201ENST00000317716 BCANQ96GW7 911 aa11.21□□□□□ -0.62
CDHR3-201ENST00000317716 ERICH6Q7L0X2 663 aa11.2□□□□□ -0.62
CDHR3-201ENST00000317716 WIZO95785 1651 aa11.12□□□□□ -0.63
CDHR3-201ENST00000317716 BAZ1BQ9UIG0 1483 aaKnown RBP11.11□□□□□ -0.63
CDHR3-201ENST00000317716 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
CDHR3-201ENST00000317716 EIF4G1Q04637 1599 aaKnown RBP11.09□□□□□ -0.63
CDHR3-201ENST00000317716 ITGAEP38570 1179 aa11.06□□□□□ -0.64
CDHR3-201ENST00000317716 NEFLP07196 543 aa11.06□□□□□ -0.64
CDHR3-201ENST00000317716 ZNF316A6NFI3 1004 aaPredicted RBP11.05□□□□□ -0.64
CDHR3-201ENST00000317716 SMARCA4P51532 1647 aa11.03□□□□□ -0.64
CDHR3-201ENST00000317716 CC2D2AQ9P2K1 1620 aa11.03□□□□□ -0.64
CDHR3-201ENST00000317716 ATAD2BQ9ULI0 1458 aa11.02□□□□□ -0.64
CDHR3-201ENST00000317716 MIER1Q8N108 512 aa11□□□□□ -0.65
CDHR3-201ENST00000317716 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
CDHR3-201ENST00000317716 FBLN2P98095 1184 aa10.96□□□□□ -0.65
CDHR3-201ENST00000317716 CNGB1Q14028 1251 aaPredicted RBP10.95□□□□□ -0.66
CDHR3-201ENST00000317716 CCDC88BA6NC98 1476 aa10.93□□□□□ -0.66
CDHR3-201ENST00000317716 SMARCA2P51531 1590 aa10.92□□□□□ -0.66
CDHR3-201ENST00000317716 ERCC6Q03468 1493 aa10.9□□□□□ -0.66
CDHR3-201ENST00000317716 NESP48681 1621 aa10.9□□□□□ -0.66
CDHR3-201ENST00000317716 FKBP8Q14318 412 aa10.84□□□□□ -0.67
CDHR3-201ENST00000317716 NCAPD3P42695 1498 aa10.83□□□□□ -0.68
CDHR3-201ENST00000317716 TOP2AP11388 1531 aaKnown RBP10.82□□□□□ -0.68
CDHR3-201ENST00000317716 BCL11AQ9H165 835 aa10.81□□□□□ -0.68
CDHR3-201ENST00000317716 ABCC8Q09428 1581 aa10.8□□□□□ -0.68
CDHR3-201ENST00000317716 CADPSQ9ULU8 1353 aa10.79□□□□□ -0.68
CDHR3-201ENST00000317716 ANP32EQ9BTT0 268 aa10.76□□□□□ -0.69
CDHR3-201ENST00000317716 TRIM52Q96A61 297 aa10.74□□□□□ -0.69
CDHR3-201ENST00000317716 P3H3Q8IVL6 736 aa10.74□□□□□ -0.69
CDHR3-201ENST00000317716 IRX6P78412 446 aaPredicted RBP10.73□□□□□ -0.69
CDHR3-201ENST00000317716 POLR3GLQ9BT43 218 aa10.73□□□□□ -0.69
CDHR3-201ENST00000317716 ARID3CA6NKF2 412 aa10.73□□□□□ -0.69
CDHR3-201ENST00000317716 SUPT16HQ9Y5B9 1047 aaKnown RBP10.72□□□□□ -0.69
CDHR3-201ENST00000317716 WRNQ14191 1432 aaPredicted RBP eCLIP10.71□□□□□ -0.69
CDHR3-201ENST00000317716 HIRIP3Q9BW71 556 aaPredicted RBP10.71□□□□□ -0.69
CDHR3-201ENST00000317716 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
CDHR3-201ENST00000317716 PDS5BQ9NTI5 1447 aa10.7□□□□□ -0.7
CDHR3-201ENST00000317716 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
CDHR3-201ENST00000317716 DDX10Q13206 875 aaKnown RBP10.69□□□□□ -0.7
CDHR3-201ENST00000317716 FANCD2Q9BXW9 1451 aa10.69□□□□□ -0.7
CDHR3-201ENST00000317716 NBR1Q14596 966 aa10.67□□□□□ -0.7
CDHR3-201ENST00000317716 CDK11AQ9UQ88 783 aaPredicted RBP10.65□□□□□ -0.7
CDHR3-201ENST00000317716 HMGXB3Q12766 1538 aa10.65□□□□□ -0.7
CDHR3-201ENST00000317716 RTL5Q5HYW3 569 aaPredicted RBP10.64□□□□□ -0.71
CDHR3-201ENST00000317716 CEP164Q9UPV0 1460 aa10.64□□□□□ -0.71
CDHR3-201ENST00000317716 CHMP7Q8WUX9 453 aaPredicted RBP10.63□□□□□ -0.71
CDHR3-201ENST00000317716 TSHZ2Q9NRE2 1034 aa10.63□□□□□ -0.71
CDHR3-201ENST00000317716 SOGA1O94964 1423 aa10.62□□□□□ -0.71
CDHR3-201ENST00000317716 FAM50AQ14320 339 aaKnown RBP10.62□□□□□ -0.71
CDHR3-201ENST00000317716 RAD54L2Q9Y4B4 1467 aa10.6□□□□□ -0.71
CDHR3-201ENST00000317716 ANP32CO43423 234 aa10.6□□□□□ -0.71
CDHR3-201ENST00000317716 SENP3-EIF4A1A0A087X0R7 540 aa10.59□□□□□ -0.71
CDHR3-201ENST00000317716 CFTRP13569 1480 aa10.58□□□□□ -0.72
CDHR3-201ENST00000317716 CUX2O14529 1486 aa10.57□□□□□ -0.72
CDHR3-201ENST00000317716 PEG3Q9GZU2 1588 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms