Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 U1.34-201ENST00000618578 162 ntBASIC7.25□□□□□ -1.25
HLA-CQ95604 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.25□□□□□ -1.25
HLA-CQ95604 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC7.25□□□□□ -1.25
HLA-CQ95604 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 AP003175.1-201ENST00000641383 6658 ntBASIC7.25□□□□□ -1.25
HLA-CQ95604 LINC01358-211ENST00000635571 1687 ntTSL 5 BASIC7.25□□□□□ -1.25
HLA-CQ95604 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.25□□□□□ -1.25
HLA-CQ95604 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC7.25□□□□□ -1.25
HLA-CQ95604 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC7.25□□□□□ -1.25
HLA-CQ95604 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
HLA-CQ95604 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC7.25□□□□□ -1.25
HLA-CQ95604 XIRP2-202ENST00000409043 3292 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
HLA-CQ95604 MAGEB18-201ENST00000325250 1811 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.24□□□□□ -1.25
HLA-CQ95604 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 CDK15-202ENST00000410091 1780 ntAPPRIS P3 TSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 MTND5P19-201ENST00000424872 1794 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RNU6-1188P-201ENST00000363795 107 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RN7SKP107-201ENST00000364157 290 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 MIR454-201ENST00000390180 115 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 AL133384.1-201ENST00000412744 351 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RAC1P4-201ENST00000419413 579 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.24□□□□□ -1.25
HLA-CQ95604 RPS26P40-201ENST00000435209 294 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 SUMO1P3-201ENST00000439961 304 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RNU7-66P-201ENST00000459469 62 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RN7SL254P-201ENST00000460609 284 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 RN7SL177P-201ENST00000476596 299 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC7.24□□□□□ -1.25
HLA-CQ95604 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 SUMO2P20-201ENST00000520803 283 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC7.24□□□□□ -1.25
HLA-CQ95604 MEG8-218ENST00000556720 456 ntTSL 3 BASIC7.24□□□□□ -1.25
HLA-CQ95604 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC7.24□□□□□ -1.25
HLA-CQ95604 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC7.24□□□□□ -1.25
HLA-CQ95604 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 AC005014.2-201ENST00000607795 599 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 MIR7854-201ENST00000620068 65 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 ZNF415-213ENST00000597503 2469 ntTSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 AP002800.1-201ENST00000624982 2225 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC7.24□□□□□ -1.25
HLA-CQ95604 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 MFF-206ENST00000392059 1710 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC7.24□□□□□ -1.25
HLA-CQ95604 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HLA-CQ95604 KPNA2P2-201ENST00000419546 1489 ntBASIC7.24□□□□□ -1.25
HLA-CQ95604 PALLD-206ENST00000505667 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 APP-209ENST00000440126 2846 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
HLA-CQ95604 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 GATAD2B-203ENST00000634408 1825 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AC010401.2-201ENST00000575137 4934 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AL139276.1-201ENST00000311910 1001 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 RNA5SP394-201ENST00000364216 119 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AL451142.1-201ENST00000375867 775 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 Y_RNA.557-201ENST00000384680 107 ntBASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms