RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 PELP1Q8IZL8 1130 aaKnown RBP14.36□□□□□ -0.11
GPNMB-201ENST00000258733 MYT1Q01538 1121 aa14.26□□□□□ -0.13
GPNMB-201ENST00000258733 TTBK1Q5TCY1 1321 aaPredicted RBP13.85□□□□□ -0.19
GPNMB-201ENST00000258733 SLC24A1O60721 1099 aa13.79□□□□□ -0.2
GPNMB-201ENST00000258733 PRKCSHP14314 528 aaPredicted RBP13.66□□□□□ -0.22
GPNMB-201ENST00000258733 APLP2Q06481 763 aa13.38□□□□□ -0.27
GPNMB-201ENST00000258733 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
GPNMB-201ENST00000258733 DAXXQ9UER7 740 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-201ENST00000258733 BCL11AQ9H165 835 aa13.02□□□□□ -0.33
GPNMB-201ENST00000258733 FAM9AQ8IZU1 332 aaPredicted RBP12.83□□□□□ -0.36
GPNMB-201ENST00000258733 NISCHQ9Y2I1 1504 aa12.73□□□□□ -0.37
GPNMB-201ENST00000258733 SCAF1Q9H7N4 1312 aaKnown RBP12.7□□□□□ -0.38
GPNMB-201ENST00000258733 HRCP23327 699 aa12.67□□□□□ -0.38
GPNMB-201ENST00000258733 EIF5BO60841 1220 aaKnown RBP12.63□□□□□ -0.39
GPNMB-201ENST00000258733 CENPBP07199 599 aaPredicted RBP12.4□□□□□ -0.43
GPNMB-201ENST00000258733 PLEKHG5O94827 1062 aa12.36□□□□□ -0.43
GPNMB-201ENST00000258733 PPARGC1BQ86YN6 1023 aaKnown RBP12.24□□□□□ -0.45
GPNMB-201ENST00000258733 NCBP3Q53F19 620 aaKnown RBP12.17□□□□□ -0.46
GPNMB-201ENST00000258733 UBE2Q2Q8WVN8 375 aa12.15□□□□□ -0.46
GPNMB-201ENST00000258733 ANP32EQ9BTT0 268 aa12.11□□□□□ -0.47
GPNMB-201ENST00000258733 PODXL2Q9NZ53 605 aa12.11□□□□□ -0.47
GPNMB-201ENST00000258733 ANO8Q9HCE9 1232 aaPredicted RBP12.02□□□□□ -0.48
GPNMB-201ENST00000258733 ACIN1Q9UKV3 1341 aaKnown RBP12□□□□□ -0.49
GPNMB-201ENST00000258733 CSRNP3Q8WYN3 585 aa11.98□□□□□ -0.49
GPNMB-201ENST00000258733 GTF3C3Q9Y5Q9 886 aa11.95□□□□□ -0.5
GPNMB-201ENST00000258733 KLHL34Q8N239 644 aa11.94□□□□□ -0.5
GPNMB-201ENST00000258733 ARXQ96QS3 562 aa11.93□□□□□ -0.5
GPNMB-201ENST00000258733 PKNOX2Q96KN3 472 aa11.91□□□□□ -0.5
GPNMB-201ENST00000258733 RANGAP1P46060 587 aaPredicted RBP11.9□□□□□ -0.5
GPNMB-201ENST00000258733 PLPPR3Q6T4P5 718 aa11.88□□□□□ -0.51
GPNMB-201ENST00000258733 NEUROD1Q13562 356 aa11.86□□□□□ -0.51
GPNMB-201ENST00000258733 RTN4Q9NQC3 1192 aaKnown RBP11.84□□□□□ -0.51
GPNMB-201ENST00000258733 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
GPNMB-201ENST00000258733 PDIA4P13667 645 aaKnown RBP11.71□□□□□ -0.53
GPNMB-201ENST00000258733 AEBP2Q6ZN18 517 aaPredicted RBP11.69□□□□□ -0.54
GPNMB-201ENST00000258733 EHMT2Q96KQ7 1210 aa11.68□□□□□ -0.54
GPNMB-201ENST00000258733 PCGF6Q9BYE7 350 aa11.68□□□□□ -0.54
GPNMB-201ENST00000258733 SALL2Q9Y467 1007 aaPredicted RBP11.68□□□□□ -0.54
GPNMB-201ENST00000258733 NEFLP07196 543 aa11.66□□□□□ -0.54
GPNMB-201ENST00000258733 PDE4CQ08493 712 aa11.65□□□□□ -0.54
GPNMB-201ENST00000258733 CCDC136Q96JN2 1154 aa11.65□□□□□ -0.55
GPNMB-201ENST00000258733 ZEB1P37275 1124 aaPredicted RBP11.61□□□□□ -0.55
GPNMB-201ENST00000258733 TULP1O00294 542 aaPredicted RBP11.55□□□□□ -0.56
GPNMB-201ENST00000258733 ERICH6BQ5W0A0 696 aa11.53□□□□□ -0.56
GPNMB-201ENST00000258733 HOMEZQ8IX15 550 aa11.51□□□□□ -0.57
GPNMB-201ENST00000258733 FGD1P98174 961 aa11.48□□□□□ -0.57
GPNMB-201ENST00000258733 ABCC9O60706 1549 aa11.48□□□□□ -0.57
GPNMB-201ENST00000258733 BCL11BQ9C0K0 894 aaPredicted RBP11.46□□□□□ -0.57
GPNMB-201ENST00000258733 DNAJC5BQ9UF47 199 aa11.44□□□□□ -0.58
GPNMB-201ENST00000258733 TAF7LQ5H9L4 462 aa11.4□□□□□ -0.58
GPNMB-201ENST00000258733 TSHZ2Q9NRE2 1034 aa11.38□□□□□ -0.59
GPNMB-201ENST00000258733 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.38□□□□□ -0.59
GPNMB-201ENST00000258733 A0A0U1RQG5 324 aaPredicted RBP11.37□□□□□ -0.59
GPNMB-201ENST00000258733 MYT1LQ9UL68 1186 aa11.34□□□□□ -0.59
GPNMB-201ENST00000258733 AAMPQ13685 434 aa11.32□□□□□ -0.6
GPNMB-201ENST00000258733 DNAJC5Q9H3Z4 198 aa11.3□□□□□ -0.6
GPNMB-201ENST00000258733 NPM2Q86SE8 214 aaKnown RBP11.3□□□□□ -0.6
GPNMB-201ENST00000258733 CLSPNQ9HAW4 1339 aa11.29□□□□□ -0.6
GPNMB-201ENST00000258733 CHMP4AQ9BY43 222 aa11.28□□□□□ -0.6
GPNMB-201ENST00000258733 AMER1Q5JTC6 1135 aaPredicted RBP11.28□□□□□ -0.6
GPNMB-201ENST00000258733 DHX37Q8IY37 1157 aaKnown RBP11.27□□□□□ -0.6
GPNMB-201ENST00000258733 DEKP35659 375 aaKnown RBP11.27□□□□□ -0.61
GPNMB-201ENST00000258733 ZMYND15Q9H091 742 aa11.26□□□□□ -0.61
GPNMB-201ENST00000258733 RBM10P98175 930 aaKnown RBP11.24□□□□□ -0.61
GPNMB-201ENST00000258733 GLIPR1L2Q4G1C9 344 aa11.23□□□□□ -0.61
GPNMB-201ENST00000258733 LOC105371045A0A1W2PR82 267 aa11.22□□□□□ -0.61
GPNMB-201ENST00000258733 BRD2P25440 801 aaKnown RBP11.21□□□□□ -0.61
GPNMB-201ENST00000258733 HAP1P54257 671 aaPredicted RBP11.21□□□□□ -0.62
GPNMB-201ENST00000258733 C14orf37Q86TY3 774 aa11.19□□□□□ -0.62
GPNMB-201ENST00000258733 RSPH6AQ9H0K4 717 aa11.18□□□□□ -0.62
GPNMB-201ENST00000258733 TAOK2Q9UL54 1235 aa11.17□□□□□ -0.62
GPNMB-201ENST00000258733 CCDC180Q9P1Z9 1646 aa11.17□□□□□ -0.62
GPNMB-201ENST00000258733 SAMD1Q6SPF0 538 aaPredicted RBP11.16□□□□□ -0.62
GPNMB-201ENST00000258733 MYO15BQ96JP2 1530 aa11.15□□□□□ -0.62
GPNMB-201ENST00000258733 PAXIP1Q6ZW49 1069 aaPredicted RBP11.15□□□□□ -0.62
GPNMB-201ENST00000258733 VSIG10Q8N0Z9 540 aa11.12□□□□□ -0.63
GPNMB-201ENST00000258733 RSPH4AQ5TD94 716 aa11.1□□□□□ -0.63
GPNMB-201ENST00000258733 SUPT16HQ9Y5B9 1047 aaKnown RBP11.06□□□□□ -0.64
GPNMB-201ENST00000258733 DIEXFQ68CQ4 756 aaKnown RBP11.05□□□□□ -0.64
GPNMB-201ENST00000258733 IL27Q8NEV9 243 aa11.05□□□□□ -0.64
GPNMB-201ENST00000258733 NAP1L5Q96NT1 182 aaPredicted RBP11.04□□□□□ -0.64
GPNMB-201ENST00000258733 ZNF326Q5BKZ1 582 aaKnown RBP11.03□□□□□ -0.64
GPNMB-201ENST00000258733 MSH5O43196 834 aa11.01□□□□□ -0.65
GPNMB-201ENST00000258733 TPRNQ4KMQ1 711 aa11.01□□□□□ -0.65
GPNMB-201ENST00000258733 TRIM26Q12899 539 aaPredicted RBP11□□□□□ -0.65
GPNMB-201ENST00000258733 CNKSR2Q8WXI2 1034 aa10.99□□□□□ -0.65
GPNMB-201ENST00000258733 RBM19Q9Y4C8 960 aaKnown RBP10.99□□□□□ -0.65
GPNMB-201ENST00000258733 YTHDC1Q96MU7 727 aaKnown RBP10.97□□□□□ -0.65
GPNMB-201ENST00000258733 FBXO3Q9UK99 471 aa10.97□□□□□ -0.65
GPNMB-201ENST00000258733 KCNA4P22459 653 aa10.95□□□□□ -0.66
GPNMB-201ENST00000258733 DCAF1Q9Y4B6 1507 aa10.95□□□□□ -0.66
GPNMB-201ENST00000258733 NAP1L2Q9ULW6 460 aaPredicted RBP10.93□□□□□ -0.66
GPNMB-201ENST00000258733 CDK11BP21127 795 aaKnown RBP10.91□□□□□ -0.66
GPNMB-201ENST00000258733 CDK11AQ9UQ88 783 aaPredicted RBP10.91□□□□□ -0.66
GPNMB-201ENST00000258733 IRX6P78412 446 aaPredicted RBP10.89□□□□□ -0.67
GPNMB-201ENST00000258733 RB1CC1Q8TDY2 1594 aa10.89□□□□□ -0.67
GPNMB-201ENST00000258733 DCAF8L2P0C7V8 631 aa10.87□□□□□ -0.67
GPNMB-201ENST00000258733 BCCIPQ9P287 314 aaKnown RBP eCLIP10.86□□□□□ -0.67
GPNMB-201ENST00000258733 ZCCHC6Q5VYS8 1495 aaKnown RBP10.86□□□□□ -0.67
GPNMB-201ENST00000258733 CHMP4BQ9H444 224 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms