Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 AC124016.1-201ENST00000609552 612 ntBASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 RNF165-205ENST00000588679 2904 ntBASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
AP4E1Q9UPM8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 AC133681.1-201ENST00000465482 601 ntBASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 C1QL1P1-201ENST00000568105 661 ntBASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 AL032819.2-201ENST00000624543 2162 ntBASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
AP4E1Q9UPM8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
AP4E1Q9UPM8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
AP4E1Q9UPM8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 C1QBPP2-201ENST00000528754 825 ntBASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 ITM2C-210ENST00000620962 501 ntBASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
AP4E1Q9UPM8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 KRT18P29-201ENST00000397031 1267 ntBASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 AC110285.5-201ENST00000611501 352 ntBASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
AP4E1Q9UPM8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms