Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 TUBB8P6-201ENST00000436895 1288 ntBASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 HLA-A-209ENST00000638375 975 ntBASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC36.95■■■■□ 3.51
SHROOM4Q9ULL8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 TSPY21P-201ENST00000433481 731 ntBASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 TSPY23P-201ENST00000440136 739 ntBASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 AL441883.1-201ENST00000566170 1045 ntBASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 NPAP1P7-201ENST00000613027 823 ntBASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC36.94■■■■□ 3.5
SHROOM4Q9ULL8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 AP005212.1-201ENST00000581547 1997 ntBASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
SHROOM4Q9ULL8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 KRT18P38-201ENST00000449496 1282 ntBASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 AC011298.2-201ENST00000617989 482 ntBASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC36.92■■■■□ 3.5
SHROOM4Q9ULL8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 VENTXP5-201ENST00000523979 775 ntBASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 AC004263.2-201ENST00000617183 678 ntBASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 TMEM179-206ENST00000616017 1645 ntBASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC36.91■■■■□ 3.5
SHROOM4Q9ULL8 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 KRT17P6-201ENST00000453795 1220 ntBASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 AC008040.2-201ENST00000461049 708 ntBASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC36.9■■■■□ 3.5
SHROOM4Q9ULL8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
SHROOM4Q9ULL8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC36.88■■■■□ 3.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms