Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC142086.2-201ENST00000569753 217 ntBASIC17.33■□□□□ 0.36
VSX1Q9NZR4 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.32■□□□□ 0.36
VSX1Q9NZR4 TNXA-203ENST00000507684 2038 ntBASIC17.31■□□□□ 0.36
VSX1Q9NZR4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 AC120498.9-201ENST00000339021 3867 ntBASIC17.31■□□□□ 0.36
VSX1Q9NZR4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 AC104771.1-201ENST00000603335 964 ntBASIC17.31■□□□□ 0.36
VSX1Q9NZR4 AL121829.2-201ENST00000620908 328 ntBASIC17.31■□□□□ 0.36
VSX1Q9NZR4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VSX1Q9NZR4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 LINC01465-201ENST00000408887 1940 ntBASIC17.3■□□□□ 0.36
VSX1Q9NZR4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 SOX15-203ENST00000570788 1093 ntBASIC17.3■□□□□ 0.36
VSX1Q9NZR4 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VSX1Q9NZR4 KRT8P8-201ENST00000434750 1448 ntBASIC17.3■□□□□ 0.36
VSX1Q9NZR4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.29■□□□□ 0.36
VSX1Q9NZR4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms