Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 IER3-202ENST00000376377 1350 ntBASIC24.73■■□□□ 1.55
USP42Q9H9J4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP42Q9H9J4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP42Q9H9J4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USP42Q9H9J4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 TSPY17P-201ENST00000450329 467 ntBASIC24.73■■□□□ 1.55
USP42Q9H9J4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.73■■□□□ 1.55
USP42Q9H9J4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
USP42Q9H9J4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
USP42Q9H9J4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 HOMER2P1-201ENST00000455653 964 ntBASIC24.72■■□□□ 1.55
USP42Q9H9J4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.72■■□□□ 1.55
USP42Q9H9J4 AL353719.1-201ENST00000566847 864 ntBASIC24.72■■□□□ 1.55
USP42Q9H9J4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USP42Q9H9J4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.71■■□□□ 1.55
USP42Q9H9J4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC24.71■■□□□ 1.55
USP42Q9H9J4 TMEM179-206ENST00000616017 1645 ntBASIC24.71■■□□□ 1.55
USP42Q9H9J4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
USP42Q9H9J4 TPM4P1-201ENST00000436100 807 ntBASIC24.71■■□□□ 1.55
USP42Q9H9J4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC24.71■■□□□ 1.55
USP42Q9H9J4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.71■■□□□ 1.55
USP42Q9H9J4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USP42Q9H9J4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC24.7■■□□□ 1.55
USP42Q9H9J4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC24.7■■□□□ 1.55
USP42Q9H9J4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC24.7■■□□□ 1.55
USP42Q9H9J4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
USP42Q9H9J4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
USP42Q9H9J4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP42Q9H9J4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 AL359075.1-203ENST00000462729 1002 ntBASIC24.7■■□□□ 1.54
USP42Q9H9J4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 AL441883.1-201ENST00000566170 1045 ntBASIC24.7■■□□□ 1.54
USP42Q9H9J4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.7■■□□□ 1.54
USP42Q9H9J4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 AL671277.2-201ENST00000458060 996 ntBASIC24.69■■□□□ 1.54
USP42Q9H9J4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP42Q9H9J4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC24.69■■□□□ 1.54
USP42Q9H9J4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC24.68■■□□□ 1.54
USP42Q9H9J4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC24.68■■□□□ 1.54
USP42Q9H9J4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP42Q9H9J4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP42Q9H9J4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP42Q9H9J4 AC008622.2-201ENST00000617006 1229 ntBASIC24.68■■□□□ 1.54
USP42Q9H9J4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.68■■□□□ 1.54
USP42Q9H9J4 AL023973.1-201ENST00000624619 620 ntBASIC24.68■■□□□ 1.54
USP42Q9H9J4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
USP42Q9H9J4 AL031432.5-201ENST00000641059 760 ntBASIC24.68■■□□□ 1.54
USP42Q9H9J4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms