Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 TSPY6P-201ENST00000448518 926 ntBASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 AC091874.3-201ENST00000512672 1195 ntBASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM56Q9BRZ2 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
TRIM56Q9BRZ2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 NCF1B-203ENST00000435988 1254 ntBASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AC005829.2-201ENST00000571422 1056 ntBASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AC104771.1-201ENST00000603335 964 ntBASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AC092118.2-201ENST00000613495 667 ntBASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM56Q9BRZ2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 TFP1-202ENST00000475455 1573 ntBASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 AL138781.1-201ENST00000566567 1274 ntBASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM56Q9BRZ2 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms