Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 RPS2P52-201ENST00000469610 820 ntBASIC18.56■□□□□ 0.56
VMP1Q96GC9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.56■□□□□ 0.56
VMP1Q96GC9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VMP1Q96GC9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 AC233263.1-201ENST00000578059 224 ntBASIC18.55■□□□□ 0.56
VMP1Q96GC9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VMP1Q96GC9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.55■□□□□ 0.56
VMP1Q96GC9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 AC098590.1-201ENST00000468126 897 ntBASIC18.54■□□□□ 0.56
VMP1Q96GC9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 AC142381.4-202ENST00000563973 229 ntBASIC18.54■□□□□ 0.56
VMP1Q96GC9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 RN7SL471P-201ENST00000580476 299 ntBASIC18.54■□□□□ 0.56
VMP1Q96GC9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 KRT16P6-202ENST00000425692 1426 ntBASIC18.54■□□□□ 0.56
VMP1Q96GC9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VMP1Q96GC9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.54■□□□□ 0.56
VMP1Q96GC9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms