Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 KRT16P5-201ENST00000455284 522 ntBASIC20.36■□□□□ 0.85
RNF43Q68DV7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 AC097493.4-201ENST00000641197 219 ntBASIC20.36■□□□□ 0.85
RNF43Q68DV7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF43Q68DV7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF43Q68DV7 KRT16P6-202ENST00000425692 1426 ntBASIC20.35■□□□□ 0.85
RNF43Q68DV7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 TSPY15P-201ENST00000457163 923 ntBASIC20.34■□□□□ 0.85
RNF43Q68DV7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF43Q68DV7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF43Q68DV7 TFP1-202ENST00000475455 1573 ntBASIC20.34■□□□□ 0.85
RNF43Q68DV7 BX119927.1-201ENST00000636596 1552 ntBASIC20.34■□□□□ 0.85
RNF43Q68DV7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 TMPOP1-202ENST00000424642 1267 ntBASIC20.33■□□□□ 0.85
RNF43Q68DV7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RNF43Q68DV7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF43Q68DV7 AC125437.2-201ENST00000625180 2167 ntBASIC20.33■□□□□ 0.85
RNF43Q68DV7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF43Q68DV7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.33■□□□□ 0.84
RNF43Q68DV7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RNF43Q68DV7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF43Q68DV7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
RNF43Q68DV7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.33■□□□□ 0.84
RNF43Q68DV7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF43Q68DV7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RNF43Q68DV7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RNF43Q68DV7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RNF43Q68DV7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms