Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.64■□□□□ 0.09
CX3CL1P78423 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CX3CL1P78423 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CX3CL1P78423 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CX3CL1P78423 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CX3CL1P78423 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CX3CL1P78423 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.64■□□□□ 0.09
CX3CL1P78423 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.63■□□□□ 0.09
CX3CL1P78423 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 POM121L13P-201ENST00000422362 380 ntBASIC15.63■□□□□ 0.09
CX3CL1P78423 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.63■□□□□ 0.09
CX3CL1P78423 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC15.63■□□□□ 0.09
CX3CL1P78423 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 AC004408.2-201ENST00000623613 2777 ntBASIC15.63■□□□□ 0.09
CX3CL1P78423 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CX3CL1P78423 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.62■□□□□ 0.09
CX3CL1P78423 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 AC125437.2-201ENST00000625180 2167 ntBASIC15.62■□□□□ 0.09
CX3CL1P78423 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CX3CL1P78423 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 ESRRAP1-201ENST00000400596 1257 ntBASIC15.62■□□□□ 0.09
CX3CL1P78423 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.62■□□□□ 0.09
CX3CL1P78423 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.62■□□□□ 0.09
CX3CL1P78423 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.62■□□□□ 0.09
CX3CL1P78423 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.62■□□□□ 0.09
CX3CL1P78423 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.62■□□□□ 0.09
CX3CL1P78423 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.62■□□□□ 0.09
CX3CL1P78423 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 AL121829.2-201ENST00000620908 328 ntBASIC15.62■□□□□ 0.09
CX3CL1P78423 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CX3CL1P78423 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.62■□□□□ 0.09
CX3CL1P78423 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CX3CL1P78423 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CX3CL1P78423 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CX3CL1P78423 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.61■□□□□ 0.09
CX3CL1P78423 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CX3CL1P78423 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms