Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC26.23■■□□□ 1.79
MSH5O43196 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
MSH5O43196 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
MSH5O43196 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC26.23■■□□□ 1.79
MSH5O43196 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC26.23■■□□□ 1.79
MSH5O43196 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26.23■■□□□ 1.79
MSH5O43196 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
MSH5O43196 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC26.23■■□□□ 1.79
MSH5O43196 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC26.23■■□□□ 1.79
MSH5O43196 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH5O43196 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC26.22■■□□□ 1.79
MSH5O43196 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH5O43196 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
MSH5O43196 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH5O43196 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH5O43196 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH5O43196 AL355355.2-201ENST00000442321 338 ntBASIC26.22■■□□□ 1.79
MSH5O43196 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
MSH5O43196 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH5O43196 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH5O43196 AL357094.1-201ENST00000603845 844 ntBASIC26.22■■□□□ 1.79
MSH5O43196 CU638689.4-208ENST00000623324 936 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
MSH5O43196 CU634019.6-203ENST00000624728 936 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
MSH5O43196 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH5O43196 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
MSH5O43196 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH5O43196 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC26.21■■□□□ 1.79
MSH5O43196 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH5O43196 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH5O43196 ZNF92P3-201ENST00000596594 954 ntBASIC26.21■■□□□ 1.79
MSH5O43196 AC003956.1-201ENST00000598450 356 ntTSL 3 BASIC26.21■■□□□ 1.79
MSH5O43196 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH5O43196 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC26.2■■□□□ 1.79
MSH5O43196 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH5O43196 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC26.2■■□□□ 1.79
MSH5O43196 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
MSH5O43196 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 GIMAP7-201ENST00000313543 1256 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
MSH5O43196 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC26.2■■□□□ 1.78
MSH5O43196 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC26.2■■□□□ 1.78
MSH5O43196 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC26.2■■□□□ 1.78
MSH5O43196 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
MSH5O43196 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26.2■■□□□ 1.78
MSH5O43196 AC092865.7-201ENST00000641832 219 ntBASIC26.2■■□□□ 1.78
MSH5O43196 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
MSH5O43196 NEFHP1-201ENST00000412845 2629 ntBASIC26.2■■□□□ 1.78
MSH5O43196 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC26.2■■□□□ 1.78
MSH5O43196 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH5O43196 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC26.19■■□□□ 1.78
MSH5O43196 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.19■■□□□ 1.78
MSH5O43196 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC26.19■■□□□ 1.78
MSH5O43196 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC26.19■■□□□ 1.78
MSH5O43196 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
MSH5O43196 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC26.19■■□□□ 1.78
MSH5O43196 RDM1-219ENST00000615378 542 ntTSL 3 BASIC26.19■■□□□ 1.78
MSH5O43196 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
MSH5O43196 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.19■■□□□ 1.78
MSH5O43196 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
MSH5O43196 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH5O43196 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH5O43196 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
MSH5O43196 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH5O43196 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH5O43196 AL390039.1-201ENST00000399148 611 ntBASIC26.18■■□□□ 1.78
MSH5O43196 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
MSH5O43196 AC099542.2-201ENST00000474149 553 ntTSL 2 BASIC26.18■■□□□ 1.78
MSH5O43196 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC26.18■■□□□ 1.78
MSH5O43196 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC26.18■■□□□ 1.78
MSH5O43196 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.18■■□□□ 1.78
MSH5O43196 MIR6786-201ENST00000616843 113 ntBASIC26.18■■□□□ 1.78
MSH5O43196 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC26.18■■□□□ 1.78
MSH5O43196 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH5O43196 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC26.17■■□□□ 1.78
MSH5O43196 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH5O43196 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms