Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.62■□□□□ 0.09
HMGB3O15347 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
HMGB3O15347 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.62■□□□□ 0.09
HMGB3O15347 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 MIR600HG-201ENST00000449175 5984 ntBASIC15.62■□□□□ 0.09
HMGB3O15347 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB3O15347 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB3O15347 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 POU5F1P4-201ENST00000413175 1085 ntBASIC15.61■□□□□ 0.09
HMGB3O15347 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC15.61■□□□□ 0.09
HMGB3O15347 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HMGB3O15347 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HMGB3O15347 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HMGB3O15347 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HMGB3O15347 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB3O15347 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
HMGB3O15347 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 MFF-208ENST00000409616 1247 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
HMGB3O15347 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB3O15347 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 KRT8P36-201ENST00000489121 1440 ntBASIC15.6■□□□□ 0.09
HMGB3O15347 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB3O15347 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.59■□□□□ 0.09
HMGB3O15347 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB3O15347 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms