Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC091948.2-201ENST00000636510 279 ntBASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CHMP4AQ9BY43 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RNU6-252P-201ENST00000363232 107 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RNA5SP428-201ENST00000365129 132 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 MIR550A3-201ENST00000390735 95 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AL353692.2-201ENST00000407054 335 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 ARL2BPP3-201ENST00000421226 480 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RPL5P25-201ENST00000441148 775 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AL645939.1-201ENST00000453429 797 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RPL37AP8-201ENST00000494116 276 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RN7SL808P-201ENST00000496066 299 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RNA5SP43-201ENST00000516559 110 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AL359219.2-201ENST00000555184 348 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC040958.1-201ENST00000561102 201 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC027104.1-201ENST00000563702 681 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 MIR4691-201ENST00000583764 85 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 ELOCP28-201ENST00000590044 317 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC010680.4-201ENST00000605334 543 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC133644.2-201ENST00000608142 540 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 STMN1P1-201ENST00000617809 440 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 MIR6864-201ENST00000617935 70 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AK6-205ENST00000618980 483 ntTSL 2 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 FRG1DP-201ENST00000635586 771 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 ERCC6-202ENST00000374127 1782 ntBASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CHMP4AQ9BY43 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AL109941.1-201ENST00000401925 229 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 RNU2-6P-201ENST00000411404 190 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC093422.3-201ENST00000428506 305 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC105402.2-201ENST00000438503 358 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AL137845.2-201ENST00000444292 988 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 CYCSP24-201ENST00000445119 316 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 TRY2P-201ENST00000448860 689 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 CYCSP42-201ENST00000450823 238 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 HIGD1AP8-201ENST00000453927 274 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 TRBV8-2-201ENST00000475637 270 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC010350.1-201ENST00000504908 231 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC008033.2-201ENST00000542626 177 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 SNRPGP1-201ENST00000553864 222 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 AL390726.5-202ENST00000564800 256 ntBASIC6.47□□□□□ -1.37
CHMP4AQ9BY43 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms