RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 NISCHQ9Y2I1 1504 aa9.38□□□□□ -0.91
PTPRD-213ENST00000537002 PELP1Q8IZL8 1130 aaKnown RBP9.22□□□□□ -0.93
PTPRD-213ENST00000537002 MYT1Q01538 1121 aa9.11□□□□□ -0.95
PTPRD-213ENST00000537002 HRCP23327 699 aa8.76□□□□□ -1.01
PTPRD-213ENST00000537002 SUPT5HO00267 1087 aaKnown RBP8.7□□□□□ -1.02
PTPRD-213ENST00000537002 DCAF8L2P0C7V8 631 aa8.67□□□□□ -1.02
PTPRD-213ENST00000537002 TTBK1Q5TCY1 1321 aaPredicted RBP8.65□□□□□ -1.02
PTPRD-213ENST00000537002 ZEB1P37275 1124 aaPredicted RBP8.6□□□□□ -1.03
PTPRD-213ENST00000537002 PCGF6Q9BYE7 350 aa8.59□□□□□ -1.03
PTPRD-213ENST00000537002 SHROOM4Q9ULL8 1493 aa8.5□□□□□ -1.05
PTPRD-213ENST00000537002 EHMT2Q96KQ7 1210 aa8.44□□□□□ -1.06
PTPRD-213ENST00000537002 DCAF1Q9Y4B6 1507 aa8.43□□□□□ -1.06
PTPRD-213ENST00000537002 CENPBP07199 599 aaPredicted RBP8.39□□□□□ -1.07
PTPRD-213ENST00000537002 PPARGC1BQ86YN6 1023 aaKnown RBP8.33□□□□□ -1.08
PTPRD-213ENST00000537002 CCDC180Q9P1Z9 1646 aa8.31□□□□□ -1.08
PTPRD-213ENST00000537002 TRIM26Q12899 539 aaPredicted RBP8.3□□□□□ -1.08
PTPRD-213ENST00000537002 YTHDC1Q96MU7 727 aaKnown RBP8.28□□□□□ -1.08
PTPRD-213ENST00000537002 ERICH6Q7L0X2 663 aa8.24□□□□□ -1.09
PTPRD-213ENST00000537002 CHIC1Q5VXU3 224 aa8.21□□□□□ -1.1
PTPRD-213ENST00000537002 CLSPNQ9HAW4 1339 aa8.2□□□□□ -1.1
PTPRD-213ENST00000537002 FAM9AQ8IZU1 332 aaPredicted RBP8.2□□□□□ -1.1
PTPRD-213ENST00000537002 CCER1Q8TC90 406 aaPredicted RBP8.19□□□□□ -1.1
PTPRD-213ENST00000537002 ABCC9O60706 1549 aa8.16□□□□□ -1.1
PTPRD-213ENST00000537002 ACIN1Q9UKV3 1341 aaKnown RBP8.15□□□□□ -1.11
PTPRD-213ENST00000537002 SCAF1Q9H7N4 1312 aaKnown RBP8.14□□□□□ -1.11
PTPRD-213ENST00000537002 GTF3C3Q9Y5Q9 886 aa8.04□□□□□ -1.12
PTPRD-213ENST00000537002 ZCCHC6Q5VYS8 1495 aaKnown RBP8.03□□□□□ -1.12
PTPRD-213ENST00000537002 MYO15BQ96JP2 1530 aa8.02□□□□□ -1.13
PTPRD-213ENST00000537002 APLP2Q06481 763 aa8□□□□□ -1.13
PTPRD-213ENST00000537002 NEFLP07196 543 aa8□□□□□ -1.13
PTPRD-213ENST00000537002 LOC105371045A0A1W2PR82 267 aa7.98□□□□□ -1.13
PTPRD-213ENST00000537002 TRIM41Q8WV44 630 aa7.96□□□□□ -1.13
PTPRD-213ENST00000537002 DIEXFQ68CQ4 756 aaKnown RBP7.94□□□□□ -1.14
PTPRD-213ENST00000537002 MYT1LQ9UL68 1186 aa7.93□□□□□ -1.14
PTPRD-213ENST00000537002 NEUROD1Q13562 356 aa7.9□□□□□ -1.14
PTPRD-213ENST00000537002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.9□□□□□ -1.15
PTPRD-213ENST00000537002 RANGAP1P46060 587 aaPredicted RBP7.88□□□□□ -1.15
PTPRD-213ENST00000537002 BCANQ96GW7 911 aa7.85□□□□□ -1.15
PTPRD-213ENST00000537002 ANP32EQ9BTT0 268 aa7.83□□□□□ -1.16
PTPRD-213ENST00000537002 PABPN1Q86U42 306 aaKnown RBP eCLIP7.82□□□□□ -1.16
PTPRD-213ENST00000537002 ZNF316A6NFI3 1004 aaPredicted RBP7.8□□□□□ -1.16
PTPRD-213ENST00000537002 BCL11AQ9H165 835 aa7.78□□□□□ -1.16
PTPRD-213ENST00000537002 UBTFP17480 764 aaKnown RBP7.77□□□□□ -1.17
PTPRD-213ENST00000537002 RTL5Q5HYW3 569 aaPredicted RBP7.76□□□□□ -1.17
PTPRD-213ENST00000537002 HNRNPUL2Q1KMD3 747 aaKnown RBP7.75□□□□□ -1.17
PTPRD-213ENST00000537002 RB1CC1Q8TDY2 1594 aa7.75□□□□□ -1.17
PTPRD-213ENST00000537002 WRNQ14191 1432 aaPredicted RBP eCLIP7.69□□□□□ -1.18
PTPRD-213ENST00000537002 DAXXQ9UER7 740 aaPredicted RBP7.68□□□□□ -1.18
PTPRD-213ENST00000537002 NACADO15069 1562 aa7.65□□□□□ -1.18
PTPRD-213ENST00000537002 ITGAEP38570 1179 aa7.65□□□□□ -1.19
PTPRD-213ENST00000537002 ATP1B4Q9UN42 357 aaPredicted RBP7.63□□□□□ -1.19
PTPRD-213ENST00000537002 EEA1Q15075 1411 aa7.63□□□□□ -1.19
PTPRD-213ENST00000537002 CDK11AQ9UQ88 783 aaPredicted RBP7.63□□□□□ -1.19
PTPRD-213ENST00000537002 ERICH6BQ5W0A0 696 aa7.63□□□□□ -1.19
PTPRD-213ENST00000537002 EIF5BO60841 1220 aaKnown RBP7.6□□□□□ -1.19
PTPRD-213ENST00000537002 CNGB1Q14028 1251 aaPredicted RBP7.6□□□□□ -1.19
PTPRD-213ENST00000537002 FKBP8Q14318 412 aa7.59□□□□□ -1.19
PTPRD-213ENST00000537002 SUPT16HQ9Y5B9 1047 aaKnown RBP7.58□□□□□ -1.2
PTPRD-213ENST00000537002 POLR3GLQ9BT43 218 aa7.56□□□□□ -1.2
PTPRD-213ENST00000537002 TSHZ2Q9NRE2 1034 aa7.55□□□□□ -1.2
PTPRD-213ENST00000537002 SCRIBQ14160 1630 aa7.53□□□□□ -1.2
PTPRD-213ENST00000537002 MIER1Q8N108 512 aa7.53□□□□□ -1.2
PTPRD-213ENST00000537002 NBR1Q14596 966 aa7.53□□□□□ -1.2
PTPRD-213ENST00000537002 PRKCSHP14314 528 aaPredicted RBP7.52□□□□□ -1.2
PTPRD-213ENST00000537002 TNIKQ9UKE5 1360 aa7.52□□□□□ -1.21
PTPRD-213ENST00000537002 RSF1Q96T23 1441 aaPredicted RBP7.52□□□□□ -1.21
PTPRD-213ENST00000537002 FANCIQ9NVI1 1328 aa7.52□□□□□ -1.21
PTPRD-213ENST00000537002 CSRNP3Q8WYN3 585 aa7.51□□□□□ -1.21
PTPRD-213ENST00000537002 ANP32CO43423 234 aa7.5□□□□□ -1.21
PTPRD-213ENST00000537002 ANP32AP39687 249 aaKnown RBP7.49□□□□□ -1.21
PTPRD-213ENST00000537002 NPM2Q86SE8 214 aaKnown RBP7.49□□□□□ -1.21
PTPRD-213ENST00000537002 CEP162Q5TB80 1403 aa7.46□□□□□ -1.22
PTPRD-213ENST00000537002 TIMELESSQ9UNS1 1208 aa7.44□□□□□ -1.22
PTPRD-213ENST00000537002 RBM19Q9Y4C8 960 aaKnown RBP7.43□□□□□ -1.22
PTPRD-213ENST00000537002 GOLGA3Q08378 1498 aa7.42□□□□□ -1.22
PTPRD-213ENST00000537002 CCER2I3L3R5 266 aa7.42□□□□□ -1.22
PTPRD-213ENST00000537002 GLIPR1L2Q4G1C9 344 aa7.42□□□□□ -1.22
PTPRD-213ENST00000537002 RTN4Q9NQC3 1192 aaKnown RBP7.42□□□□□ -1.22
PTPRD-213ENST00000537002 IRX6P78412 446 aaPredicted RBP7.41□□□□□ -1.22
PTPRD-213ENST00000537002 TRIM52Q96A61 297 aa7.41□□□□□ -1.22
PTPRD-213ENST00000537002 FAM50AQ14320 339 aaKnown RBP7.38□□□□□ -1.23
PTPRD-213ENST00000537002 ZBTB47Q9UFB7 747 aaPredicted RBP7.38□□□□□ -1.23
PTPRD-213ENST00000537002 HNRNPUQ00839 825 aaKnown RBP eCLIP7.37□□□□□ -1.23
PTPRD-213ENST00000537002 DDX10Q13206 875 aaKnown RBP7.36□□□□□ -1.23
PTPRD-213ENST00000537002 ERCC6Q03468 1493 aa7.36□□□□□ -1.23
PTPRD-213ENST00000537002 CEP164Q9UPV0 1460 aa7.36□□□□□ -1.23
PTPRD-213ENST00000537002 USP35Q9P2H5 1018 aa7.36□□□□□ -1.23
PTPRD-213ENST00000537002 BAZ1BQ9UIG0 1483 aaKnown RBP7.36□□□□□ -1.23
PTPRD-213ENST00000537002 VPS8Q8N3P4 1428 aa7.35□□□□□ -1.23
PTPRD-213ENST00000537002 CECR2Q9BXF3 1484 aa7.35□□□□□ -1.23
PTPRD-213ENST00000537002 DEKP35659 375 aaKnown RBP7.34□□□□□ -1.23
PTPRD-213ENST00000537002 ARXQ96QS3 562 aa7.32□□□□□ -1.24
PTPRD-213ENST00000537002 UBE2Q2Q8WVN8 375 aa7.31□□□□□ -1.24
PTPRD-213ENST00000537002 BAZ1AQ9NRL2 1556 aaPredicted RBP7.31□□□□□ -1.24
PTPRD-213ENST00000537002 CLIP1P30622 1438 aa7.31□□□□□ -1.24
PTPRD-213ENST00000537002 FBLN2P98095 1184 aa7.3□□□□□ -1.24
PTPRD-213ENST00000537002 FAM9BQ8IZU0 186 aa7.3□□□□□ -1.24
PTPRD-213ENST00000537002 PPP4R2Q9NY27 417 aa7.29□□□□□ -1.24
PTPRD-213ENST00000537002 CCDC136Q96JN2 1154 aa7.29□□□□□ -1.24
PTPRD-213ENST00000537002 NOP58Q9Y2X3 529 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms