RNA–Protein interactions for RNA: ENST00000409101.7

SCN3A-203, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN3A, Length 6,599 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-203ENST00000409101 DCAF8L2P0C7V8 631 aa9.15□□□□□ -0.95
SCN3A-203ENST00000409101 NISCHQ9Y2I1 1504 aa8.73□□□□□ -1.01
SCN3A-203ENST00000409101 SUPT5HO00267 1087 aaKnown RBP8.34□□□□□ -1.07
SCN3A-203ENST00000409101 SHROOM4Q9ULL8 1493 aa8.31□□□□□ -1.08
SCN3A-203ENST00000409101 FAM9AQ8IZU1 332 aaPredicted RBP8.21□□□□□ -1.1
SCN3A-203ENST00000409101 EHMT2Q96KQ7 1210 aa8.09□□□□□ -1.11
SCN3A-203ENST00000409101 APLP2Q06481 763 aa8.04□□□□□ -1.12
SCN3A-203ENST00000409101 ATP1B4Q9UN42 357 aaPredicted RBP7.88□□□□□ -1.15
SCN3A-203ENST00000409101 RANGAP1P46060 587 aaPredicted RBP7.87□□□□□ -1.15
SCN3A-203ENST00000409101 ABCC9O60706 1549 aa7.81□□□□□ -1.16
SCN3A-203ENST00000409101 TRIM41Q8WV44 630 aa7.78□□□□□ -1.16
SCN3A-203ENST00000409101 TTBK1Q5TCY1 1321 aaPredicted RBP7.77□□□□□ -1.17
SCN3A-203ENST00000409101 MYT1LQ9UL68 1186 aa7.74□□□□□ -1.17
SCN3A-203ENST00000409101 UBTFP17480 764 aaKnown RBP7.73□□□□□ -1.17
SCN3A-203ENST00000409101 PABPN1Q86U42 306 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN3A-203ENST00000409101 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.69□□□□□ -1.18
SCN3A-203ENST00000409101 HNRNPUL2Q1KMD3 747 aaKnown RBP7.69□□□□□ -1.18
SCN3A-203ENST00000409101 PELP1Q8IZL8 1130 aaKnown RBP7.54□□□□□ -1.2
SCN3A-203ENST00000409101 FBLN2P98095 1184 aa7.53□□□□□ -1.2
SCN3A-203ENST00000409101 CHIC1Q5VXU3 224 aa7.53□□□□□ -1.2
SCN3A-203ENST00000409101 PCGF6Q9BYE7 350 aa7.51□□□□□ -1.21
SCN3A-203ENST00000409101 CCER1Q8TC90 406 aaPredicted RBP7.46□□□□□ -1.21
SCN3A-203ENST00000409101 ITGAEP38570 1179 aa7.43□□□□□ -1.22
SCN3A-203ENST00000409101 PPARGC1BQ86YN6 1023 aaKnown RBP7.39□□□□□ -1.23
SCN3A-203ENST00000409101 SLC4A1APQ9BWU0 796 aaKnown RBP7.37□□□□□ -1.23
SCN3A-203ENST00000409101 ZEB1P37275 1124 aaPredicted RBP7.36□□□□□ -1.23
SCN3A-203ENST00000409101 POLR3GLQ9BT43 218 aa7.36□□□□□ -1.23
SCN3A-203ENST00000409101 SCRIBQ14160 1630 aa7.36□□□□□ -1.23
SCN3A-203ENST00000409101 NPM1P06748 294 aaKnown RBP eCLIP7.34□□□□□ -1.24
SCN3A-203ENST00000409101 FAM50AQ14320 339 aaKnown RBP7.31□□□□□ -1.24
SCN3A-203ENST00000409101 BCANQ96GW7 911 aa7.31□□□□□ -1.24
SCN3A-203ENST00000409101 ESF1Q9H501 851 aaKnown RBP7.31□□□□□ -1.24
SCN3A-203ENST00000409101 RB1CC1Q8TDY2 1594 aa7.31□□□□□ -1.24
SCN3A-203ENST00000409101 CCDC180Q9P1Z9 1646 aa7.3□□□□□ -1.24
SCN3A-203ENST00000409101 TRIM52Q96A61 297 aa7.29□□□□□ -1.24
SCN3A-203ENST00000409101 ARID3CA6NKF2 412 aa7.27□□□□□ -1.25
SCN3A-203ENST00000409101 PLPPR3Q6T4P5 718 aa7.25□□□□□ -1.25
SCN3A-203ENST00000409101 CDK11AQ9UQ88 783 aaPredicted RBP7.24□□□□□ -1.25
SCN3A-203ENST00000409101 P3H3Q8IVL6 736 aa7.23□□□□□ -1.25
SCN3A-203ENST00000409101 NEFLP07196 543 aa7.23□□□□□ -1.25
SCN3A-203ENST00000409101 CENPBP07199 599 aaPredicted RBP7.22□□□□□ -1.25
SCN3A-203ENST00000409101 ZNF777Q9ULD5 760 aaPredicted RBP7.22□□□□□ -1.25
SCN3A-203ENST00000409101 LOC105371045A0A1W2PR82 267 aa7.21□□□□□ -1.25
SCN3A-203ENST00000409101 CNGB1Q14028 1251 aaPredicted RBP7.21□□□□□ -1.25
SCN3A-203ENST00000409101 CHMP7Q8WUX9 453 aaPredicted RBP7.21□□□□□ -1.26
SCN3A-203ENST00000409101 TRIM26Q12899 539 aaPredicted RBP7.2□□□□□ -1.26
SCN3A-203ENST00000409101 ERCC6Q03468 1493 aa7.2□□□□□ -1.26
SCN3A-203ENST00000409101 ERICH6Q7L0X2 663 aa7.2□□□□□ -1.26
SCN3A-203ENST00000409101 STAG3Q9UJ98 1225 aa7.19□□□□□ -1.26
SCN3A-203ENST00000409101 ZCCHC6Q5VYS8 1495 aaKnown RBP7.18□□□□□ -1.26
SCN3A-203ENST00000409101 NACADO15069 1562 aa7.16□□□□□ -1.26
SCN3A-203ENST00000409101 ZNF326Q5BKZ1 582 aaKnown RBP7.16□□□□□ -1.26
SCN3A-203ENST00000409101 YTHDC1Q96MU7 727 aaKnown RBP7.15□□□□□ -1.26
SCN3A-203ENST00000409101 NEUROD1Q13562 356 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 CSRNP3Q8WYN3 585 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 SLC24A1O60721 1099 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 CHGAP10645 457 aaKnown RBP7.12□□□□□ -1.27
SCN3A-203ENST00000409101 BAZ1BQ9UIG0 1483 aaKnown RBP7.09□□□□□ -1.27
SCN3A-203ENST00000409101 TRHP20396 242 aaPredicted RBP7.08□□□□□ -1.28
SCN3A-203ENST00000409101 NEFMP07197 916 aa7.08□□□□□ -1.28
SCN3A-203ENST00000409101 ARID4BQ4LE39 1312 aaPredicted RBP7.07□□□□□ -1.28
SCN3A-203ENST00000409101 KCNH8Q96L42 1107 aa7.05□□□□□ -1.28
SCN3A-203ENST00000409101 DAXXQ9UER7 740 aaPredicted RBP7.05□□□□□ -1.28
SCN3A-203ENST00000409101 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCN3A-203ENST00000409101 SCAF1Q9H7N4 1312 aaKnown RBP7.03□□□□□ -1.28
SCN3A-203ENST00000409101 TSPY4P0CV99 314 aa7.01□□□□□ -1.29
SCN3A-203ENST00000409101 TSPY10P0CW01 314 aa7.01□□□□□ -1.29
SCN3A-203ENST00000409101 ZBTB47Q9UFB7 747 aaPredicted RBP7.01□□□□□ -1.29
SCN3A-203ENST00000409101 PPP1R15AO75807 674 aaPredicted RBP7□□□□□ -1.29
SCN3A-203ENST00000409101 PLEKHD1A6NEE1 506 aa7□□□□□ -1.29
SCN3A-203ENST00000409101 C14orf37Q86TY3 774 aa7□□□□□ -1.29
SCN3A-203ENST00000409101 CLSPNQ9HAW4 1339 aa6.98□□□□□ -1.29
SCN3A-203ENST00000409101 MTUS2Q5JR59 1369 aa6.97□□□□□ -1.29
SCN3A-203ENST00000409101 CHIC2Q9UKJ5 165 aa6.96□□□□□ -1.29
SCN3A-203ENST00000409101 CANXP27824 592 aaKnown RBP6.95□□□□□ -1.3
SCN3A-203ENST00000409101 A0A0G2JS52 829 aa6.95□□□□□ -1.3
SCN3A-203ENST00000409101 HAP1P54257 671 aaPredicted RBP6.94□□□□□ -1.3
SCN3A-203ENST00000409101 PDS5BQ9NTI5 1447 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 ANP32CO43423 234 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 BAZ1AQ9NRL2 1556 aaPredicted RBP6.93□□□□□ -1.3
SCN3A-203ENST00000409101 HRCP23327 699 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 RSF1Q96T23 1441 aaPredicted RBP6.92□□□□□ -1.3
SCN3A-203ENST00000409101 KIF27Q86VH2 1401 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 CECR2Q9BXF3 1484 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 SENP3Q9H4L4 574 aaPredicted RBP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 PLEKHG5O94827 1062 aa6.91□□□□□ -1.3
SCN3A-203ENST00000409101 WRNQ14191 1432 aaPredicted RBP eCLIP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 EIF4G1Q04637 1599 aaKnown RBP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 BCL11AQ9H165 835 aa6.9□□□□□ -1.31
SCN3A-203ENST00000409101 TONSLQ96HA7 1378 aa6.89□□□□□ -1.31
SCN3A-203ENST00000409101 SMARCA2P51531 1590 aa6.89□□□□□ -1.31
SCN3A-203ENST00000409101 ZNF316A6NFI3 1004 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-203ENST00000409101 CFDP1Q9UEE9 299 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-203ENST00000409101 KDM2AQ9Y2K7 1162 aa6.87□□□□□ -1.31
SCN3A-203ENST00000409101 NPM2Q86SE8 214 aaKnown RBP6.87□□□□□ -1.31
SCN3A-203ENST00000409101 MLECQ14165 292 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 DCAF1Q9Y4B6 1507 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 CLIP1P30622 1438 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 AEBP2Q6ZN18 517 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms