RNA–Protein interactions for RNA: ENST00000507476.5

LINC01088-203, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 3 BASIC

Gene LINC01088, Length 785 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-203ENST00000507476 AEBP2Q6ZN18 517 aaPredicted RBP32.97■■■□□ 2.87
LINC01088-203ENST00000507476 CHIC1Q5VXU3 224 aa31.5■■■□□ 2.63
LINC01088-203ENST00000507476 SENP3Q9H4L4 574 aaPredicted RBP28■■■□□ 2.07
LINC01088-203ENST00000507476 PHF23Q9BUL5 403 aaPredicted RBP27.71■■■□□ 2.03
LINC01088-203ENST00000507476 FOXD1Q16676 465 aa26.13■■□□□ 1.77
LINC01088-203ENST00000507476 PLPPR3Q6T4P5 718 aa25.24■■□□□ 1.63
LINC01088-203ENST00000507476 PPP6R1Q9UPN7 881 aa24.64■■□□□ 1.54
LINC01088-203ENST00000507476 ADRA2BP18089 450 aa24.56■■□□□ 1.52
LINC01088-203ENST00000507476 PIAS4Q8N2W9 510 aaPredicted RBP24.43■■□□□ 1.5
LINC01088-203ENST00000507476 MSH5O43196 834 aa24.29■■□□□ 1.48
LINC01088-203ENST00000507476 POTEDQ86YR6 584 aa23.34■■□□□ 1.33
LINC01088-203ENST00000507476 MAPK8IP2Q13387 824 aaPredicted RBP22.5■■□□□ 1.19
LINC01088-203ENST00000507476 SCAF1Q9H7N4 1312 aaKnown RBP22.37■■□□□ 1.17
LINC01088-203ENST00000507476 DMRT2Q9Y5R5 561 aa22.27■■□□□ 1.16
LINC01088-203ENST00000507476 PPP4R3CPQ6ZMV5 832 aa22.18■■□□□ 1.14
LINC01088-203ENST00000507476 CNKSR2Q8WXI2 1034 aa21.69■■□□□ 1.06
LINC01088-203ENST00000507476 HOXD11P31277 338 aaPredicted RBP21.55■■□□□ 1.04
LINC01088-203ENST00000507476 RNF216Q9NWF9 866 aaPredicted RBP21.44■■□□□ 1.02
LINC01088-203ENST00000507476 NCBP3Q53F19 620 aaKnown RBP21.35■■□□□ 1.01
LINC01088-203ENST00000507476 DCAF8L1A6NGE4 600 aa21.31■■□□□ 1
LINC01088-203ENST00000507476 NPM3O75607 178 aaKnown RBP21.12■□□□□ 0.97
LINC01088-203ENST00000507476 KCNA4P22459 653 aa20.94■□□□□ 0.94
LINC01088-203ENST00000507476 RNF39Q9H2S5 420 aa20.79■□□□□ 0.92
LINC01088-203ENST00000507476 DNAJC5BQ9UF47 199 aa20.73■□□□□ 0.91
LINC01088-203ENST00000507476 CACNB1Q02641 598 aaPredicted RBP20.69■□□□□ 0.9
LINC01088-203ENST00000507476 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.5■□□□□ 0.87
LINC01088-203ENST00000507476 C1QBPQ07021 282 aaKnown RBP20.46■□□□□ 0.87
LINC01088-203ENST00000507476 U3KPZ7 1027 aaPredicted RBP20.15■□□□□ 0.82
LINC01088-203ENST00000507476 SLC4A2P04920 1241 aa20.13■□□□□ 0.81
LINC01088-203ENST00000507476 SPINK5Q9NQ38 1064 aaPredicted RBP19.79■□□□□ 0.76
LINC01088-203ENST00000507476 SLC4A1APQ9BWU0 796 aaKnown RBP19.78■□□□□ 0.76
LINC01088-203ENST00000507476 CAPN15O75808 1086 aa19.69■□□□□ 0.74
LINC01088-203ENST00000507476 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.57■□□□□ 0.72
LINC01088-203ENST00000507476 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
LINC01088-203ENST00000507476 DSG3P32926 999 aa19.55■□□□□ 0.72
LINC01088-203ENST00000507476 APLP2Q06481 763 aa19.5■□□□□ 0.71
LINC01088-203ENST00000507476 SAMD1Q6SPF0 538 aaPredicted RBP19.5■□□□□ 0.71
LINC01088-203ENST00000507476 MYCNP04198 464 aaPredicted RBP19.49■□□□□ 0.71
LINC01088-203ENST00000507476 TRHP20396 242 aaPredicted RBP19.44■□□□□ 0.7
LINC01088-203ENST00000507476 FOXD4L1Q9NU39 408 aa19.43■□□□□ 0.7
LINC01088-203ENST00000507476 ZNF219Q9P2Y4 722 aaPredicted RBP19.39■□□□□ 0.69
LINC01088-203ENST00000507476 ZBTB22O15209 634 aa19.3■□□□□ 0.68
LINC01088-203ENST00000507476 ABCB7O75027 752 aa19.29■□□□□ 0.68
LINC01088-203ENST00000507476 ATF5Q9Y2D1 282 aaPredicted RBP19.09■□□□□ 0.65
LINC01088-203ENST00000507476 POLA2Q14181 598 aa18.98■□□□□ 0.63
LINC01088-203ENST00000507476 ATXN8OSP0DMR3 200 aa18.79■□□□□ 0.6
LINC01088-203ENST00000507476 CSRNP3Q8WYN3 585 aa18.6■□□□□ 0.57
LINC01088-203ENST00000507476 RBM42Q9BTD8 480 aaKnown RBP18.58■□□□□ 0.56
LINC01088-203ENST00000507476 ZBTB12Q9Y330 459 aaPredicted RBP18.57■□□□□ 0.56
LINC01088-203ENST00000507476 EHMT2Q96KQ7 1210 aa18.47■□□□□ 0.55
LINC01088-203ENST00000507476 OSCARQ8IYS5 282 aa18.39■□□□□ 0.53
LINC01088-203ENST00000507476 POTEHQ6S545 545 aa18.32■□□□□ 0.52
LINC01088-203ENST00000507476 AKT1S1Q96B36 256 aa18.24■□□□□ 0.51
LINC01088-203ENST00000507476 FBLN2P98095 1184 aa18.23■□□□□ 0.51
LINC01088-203ENST00000507476 MKRN4PQ13434 485 aaPredicted RBP18.23■□□□□ 0.51
LINC01088-203ENST00000507476 CHRDL2Q6WN34 429 aa18.12■□□□□ 0.49
LINC01088-203ENST00000507476 REM2Q8IYK8 340 aaPredicted RBP18.09■□□□□ 0.49
LINC01088-203ENST00000507476 SPDYE2BA6NHP3 402 aa18.05■□□□□ 0.48
LINC01088-203ENST00000507476 SPDYE6P0CI01 402 aa18.05■□□□□ 0.48
LINC01088-203ENST00000507476 SPDYE2Q495Y8 402 aa18.05■□□□□ 0.48
LINC01088-203ENST00000507476 PITPNM1O00562 1244 aa17.91■□□□□ 0.46
LINC01088-203ENST00000507476 ZNF692Q9BU19 519 aaPredicted RBP17.87■□□□□ 0.45
LINC01088-203ENST00000507476 SSUH2Q9Y2M2 353 aa17.87■□□□□ 0.45
LINC01088-203ENST00000507476 PIP4P2Q8N4L2 257 aa17.76■□□□□ 0.43
LINC01088-203ENST00000507476 FXR2P51116 673 aaKnown RBP eCLIP17.7■□□□□ 0.42
LINC01088-203ENST00000507476 SPDYE1Q8NFV5 336 aaPredicted RBP17.67■□□□□ 0.42
LINC01088-203ENST00000507476 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.41
LINC01088-203ENST00000507476 CLEC11AQ9Y240 323 aa17.63■□□□□ 0.41
LINC01088-203ENST00000507476 SPDYE4A6NLX3 237 aa17.43■□□□□ 0.38
LINC01088-203ENST00000507476 PRKAR2AP13861 404 aaKnown RBP17.43■□□□□ 0.38
LINC01088-203ENST00000507476 PRR29P0C7W0 189 aa17.36■□□□□ 0.37
LINC01088-203ENST00000507476 HAX1O00165 279 aa17.34■□□□□ 0.37
LINC01088-203ENST00000507476 CHADLQ6NUI6 762 aa17.31■□□□□ 0.36
LINC01088-203ENST00000507476 SP7Q8TDD2 431 aaPredicted RBP17.28■□□□□ 0.36
LINC01088-203ENST00000507476 EVX2Q03828 476 aa17.22■□□□□ 0.35
LINC01088-203ENST00000507476 STAG3Q9UJ98 1225 aa17.16■□□□□ 0.34
LINC01088-203ENST00000507476 C19orf67A6NJJ6 358 aa17.13■□□□□ 0.33
LINC01088-203ENST00000507476 PROM2Q8N271 834 aa17.1■□□□□ 0.33
LINC01088-203ENST00000507476 FARP1Q9Y4F1 1045 aaPredicted RBP17.06■□□□□ 0.32
LINC01088-203ENST00000507476 CREBZFQ9NS37 354 aa17.05■□□□□ 0.32
LINC01088-203ENST00000507476 CD44P16070 742 aaKnown RBP16.89■□□□□ 0.29
LINC01088-203ENST00000507476 FKBP8Q14318 412 aa16.82■□□□□ 0.28
LINC01088-203ENST00000507476 MNX1P50219 401 aaPredicted RBP16.81■□□□□ 0.28
LINC01088-203ENST00000507476 GABBR2O75899 941 aa16.8■□□□□ 0.28
LINC01088-203ENST00000507476 ZRANB1Q9UGI0 708 aa16.68■□□□□ 0.26
LINC01088-203ENST00000507476 NPM1P06748 294 aaKnown RBP eCLIP16.67■□□□□ 0.26
LINC01088-203ENST00000507476 ZNF579Q8NAF0 562 aaKnown RBP16.65■□□□□ 0.26
LINC01088-203ENST00000507476 MIER1Q8N108 512 aa16.58■□□□□ 0.24
LINC01088-203ENST00000507476 PAK3O75914 559 aaPredicted RBP16.55■□□□□ 0.24
LINC01088-203ENST00000507476 CLCN6P51797 869 aa16.55■□□□□ 0.24
LINC01088-203ENST00000507476 PHF12Q96QT6 1004 aa16.51■□□□□ 0.23
LINC01088-203ENST00000507476 POTEIP0CG38 1075 aa16.49■□□□□ 0.23
LINC01088-203ENST00000507476 PLEKHG5O94827 1062 aa16.48■□□□□ 0.23
LINC01088-203ENST00000507476 PLCD3Q8N3E9 789 aa16.47■□□□□ 0.23
LINC01088-203ENST00000507476 GALR2O43603 387 aaPredicted RBP16.44■□□□□ 0.22
LINC01088-203ENST00000507476 TSPYL2Q9H2G4 693 aaPredicted RBP16.42■□□□□ 0.22
LINC01088-203ENST00000507476 RASEFQ8IZ41 740 aa16.37■□□□□ 0.21
LINC01088-203ENST00000507476 DCBLD2Q96PD2 775 aa16.36■□□□□ 0.21
LINC01088-203ENST00000507476 CCDC61Q9Y6R9 512 aa16.36■□□□□ 0.21
LINC01088-203ENST00000507476 FBXO3Q9UK99 471 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms