Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 CD99P1-205ENST00000527459 561 ntBASIC20.1■□□□□ 0.81
PCDH9Q9HC56 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH9Q9HC56 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDH9Q9HC56 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 UNC93B4-201ENST00000505679 747 ntBASIC20.08■□□□□ 0.81
PCDH9Q9HC56 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.08■□□□□ 0.81
PCDH9Q9HC56 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 AC093503.3-201ENST00000624917 2352 ntBASIC20.08■□□□□ 0.8
PCDH9Q9HC56 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 TFP1-202ENST00000475455 1573 ntBASIC20.08■□□□□ 0.8
PCDH9Q9HC56 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
PCDH9Q9HC56 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.07■□□□□ 0.8
PCDH9Q9HC56 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDH9Q9HC56 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDH9Q9HC56 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms