Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 AL355075.4-201ENST00000554988 638 ntBASIC24.36■■□□□ 1.49
USP44Q9H0E7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 MIR4785-201ENST00000585005 73 ntBASIC24.36■■□□□ 1.49
USP44Q9H0E7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 REXO1L10P-201ENST00000615707 1290 ntBASIC24.36■■□□□ 1.49
USP44Q9H0E7 REXO1L12P-201ENST00000622156 912 ntBASIC24.36■■□□□ 1.49
USP44Q9H0E7 AL031985.4-201ENST00000642138 673 ntBASIC24.36■■□□□ 1.49
USP44Q9H0E7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC24.36■■□□□ 1.49
USP44Q9H0E7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP44Q9H0E7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP44Q9H0E7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP44Q9H0E7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP44Q9H0E7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC24.35■■□□□ 1.49
USP44Q9H0E7 KRT17P2-201ENST00000300992 1314 ntBASIC24.35■■□□□ 1.49
USP44Q9H0E7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP44Q9H0E7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP44Q9H0E7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP44Q9H0E7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP44Q9H0E7 AL355355.2-201ENST00000442321 338 ntBASIC24.34■■□□□ 1.49
USP44Q9H0E7 AC008040.2-201ENST00000461049 708 ntBASIC24.34■■□□□ 1.49
USP44Q9H0E7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 AL160286.2-201ENST00000567150 934 ntBASIC24.34■■□□□ 1.49
USP44Q9H0E7 AC131212.4-201ENST00000623606 975 ntBASIC24.34■■□□□ 1.49
USP44Q9H0E7 ZNF815P-204ENST00000434898 1737 ntBASIC24.34■■□□□ 1.49
USP44Q9H0E7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.34■■□□□ 1.49
USP44Q9H0E7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP44Q9H0E7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 AC026271.3-201ENST00000571884 352 ntBASIC24.33■■□□□ 1.49
USP44Q9H0E7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP44Q9H0E7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.33■■□□□ 1.49
USP44Q9H0E7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.48
USP44Q9H0E7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 B3GAT3P1-201ENST00000471720 806 ntBASIC24.32■■□□□ 1.48
USP44Q9H0E7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 AC130371.2-201ENST00000619443 611 ntBASIC24.32■■□□□ 1.48
USP44Q9H0E7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
USP44Q9H0E7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP44Q9H0E7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC24.31■■□□□ 1.48
USP44Q9H0E7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP44Q9H0E7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms