Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 MMP23A-201ENST00000234610 1017 ntBASIC18.06■□□□□ 0.48
BEST3Q8N1M1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 LINC01006-201ENST00000333319 2292 ntBASIC18.06■□□□□ 0.48
BEST3Q8N1M1 AP005212.1-201ENST00000581547 1997 ntBASIC18.06■□□□□ 0.48
BEST3Q8N1M1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 UNC93B2-201ENST00000285383 730 ntBASIC18.05■□□□□ 0.48
BEST3Q8N1M1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 AP000525.1-201ENST00000608286 694 ntBASIC18.05■□□□□ 0.48
BEST3Q8N1M1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 AC079598.2-202ENST00000546624 1451 ntBASIC18.05■□□□□ 0.48
BEST3Q8N1M1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BEST3Q8N1M1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AL445675.2-201ENST00000620291 557 ntBASIC18.04■□□□□ 0.48
BEST3Q8N1M1 AL031985.4-201ENST00000642138 673 ntBASIC18.04■□□□□ 0.48
BEST3Q8N1M1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BEST3Q8N1M1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 AC116562.2-201ENST00000507042 360 ntBASIC18.03■□□□□ 0.48
BEST3Q8N1M1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 GABARAPL3-202ENST00000624044 1851 ntBASIC18.03■□□□□ 0.48
BEST3Q8N1M1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 AL512408.1-201ENST00000569378 2000 ntBASIC18.03■□□□□ 0.48
BEST3Q8N1M1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BEST3Q8N1M1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.02■□□□□ 0.48
BEST3Q8N1M1 AL391422.3-201ENST00000603791 2761 ntBASIC18.02■□□□□ 0.48
BEST3Q8N1M1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BEST3Q8N1M1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BEST3Q8N1M1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms