Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF43Q68DV7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RNF43Q68DV7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 PRKY-204ENST00000533551 1019 ntBASIC20.4■□□□□ 0.86
RNF43Q68DV7 RARRES2P10-201ENST00000564312 460 ntBASIC20.4■□□□□ 0.86
RNF43Q68DV7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 AL049637.2-201ENST00000641778 930 ntBASIC20.4■□□□□ 0.86
RNF43Q68DV7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF43Q68DV7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF43Q68DV7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF43Q68DV7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF43Q68DV7 TNXA-203ENST00000507684 2038 ntBASIC20.39■□□□□ 0.86
RNF43Q68DV7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
RNF43Q68DV7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.39■□□□□ 0.86
RNF43Q68DV7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.39■□□□□ 0.86
RNF43Q68DV7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF43Q68DV7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 RCN1P1-201ENST00000400413 996 ntBASIC20.39■□□□□ 0.85
RNF43Q68DV7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF43Q68DV7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
RNF43Q68DV7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 AL445228.2-201ENST00000605589 952 ntBASIC20.38■□□□□ 0.85
RNF43Q68DV7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 AP000974.1-201ENST00000623909 2387 ntBASIC20.38■□□□□ 0.85
RNF43Q68DV7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RNF43Q68DV7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF43Q68DV7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF43Q68DV7 AC116351.2-201ENST00000606540 1585 ntBASIC20.37■□□□□ 0.85
RNF43Q68DV7 NBPF21P-201ENST00000425093 1451 ntBASIC20.37■□□□□ 0.85
RNF43Q68DV7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF43Q68DV7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 AL135905.2-201ENST00000584934 1404 ntBASIC20.36■□□□□ 0.85
RNF43Q68DV7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF43Q68DV7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RNF43Q68DV7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms