Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
IRX4P78413 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.2■□□□□ 0.82
IRX4P78413 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
IRX4P78413 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.2■□□□□ 0.82
IRX4P78413 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
IRX4P78413 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.19■□□□□ 0.82
IRX4P78413 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.19■□□□□ 0.82
IRX4P78413 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 RARRES2P10-201ENST00000564312 460 ntBASIC20.19■□□□□ 0.82
IRX4P78413 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
IRX4P78413 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
IRX4P78413 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
IRX4P78413 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 AC116050.2-201ENST00000612102 1779 ntBASIC20.18■□□□□ 0.82
IRX4P78413 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.18■□□□□ 0.82
IRX4P78413 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.18■□□□□ 0.82
IRX4P78413 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
IRX4P78413 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.18■□□□□ 0.82
IRX4P78413 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.18■□□□□ 0.82
IRX4P78413 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
IRX4P78413 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.18■□□□□ 0.82
IRX4P78413 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.18■□□□□ 0.82
IRX4P78413 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.18■□□□□ 0.82
IRX4P78413 AC005829.2-201ENST00000571422 1056 ntBASIC20.18■□□□□ 0.82
IRX4P78413 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.18■□□□□ 0.82
IRX4P78413 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
IRX4P78413 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.18■□□□□ 0.82
IRX4P78413 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
IRX4P78413 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.17■□□□□ 0.82
IRX4P78413 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.17■□□□□ 0.82
IRX4P78413 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
IRX4P78413 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
IRX4P78413 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
IRX4P78413 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.17■□□□□ 0.82
IRX4P78413 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.17■□□□□ 0.82
IRX4P78413 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 AL158211.5-201ENST00000623583 2518 ntBASIC20.17■□□□□ 0.82
IRX4P78413 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.17■□□□□ 0.82
IRX4P78413 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.17■□□□□ 0.82
IRX4P78413 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
IRX4P78413 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
IRX4P78413 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
IRX4P78413 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
IRX4P78413 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 TMPOP1-202ENST00000424642 1267 ntBASIC20.16■□□□□ 0.82
IRX4P78413 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.16■□□□□ 0.82
IRX4P78413 MIR2861-201ENST00000636310 90 ntBASIC20.16■□□□□ 0.82
IRX4P78413 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
IRX4P78413 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
IRX4P78413 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
IRX4P78413 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms