Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF4P78317 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RNF4P78317 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF4P78317 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.04■□□□□ 0.48
RNF4P78317 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF4P78317 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF4P78317 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.04■□□□□ 0.48
RNF4P78317 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.04■□□□□ 0.48
RNF4P78317 AL445675.2-201ENST00000620291 557 ntBASIC18.04■□□□□ 0.48
RNF4P78317 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF4P78317 CR392000.1-201ENST00000624770 1228 ntBASIC18.04■□□□□ 0.48
RNF4P78317 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RNF4P78317 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RNF4P78317 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF4P78317 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
RNF4P78317 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF4P78317 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF4P78317 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF4P78317 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF4P78317 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF4P78317 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
RNF4P78317 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF4P78317 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF4P78317 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF4P78317 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF4P78317 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.03■□□□□ 0.48
RNF4P78317 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 KRT16P1-201ENST00000399124 1418 ntBASIC18.03■□□□□ 0.48
RNF4P78317 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF4P78317 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF4P78317 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 AC073130.3-201ENST00000624389 2278 ntBASIC18.02■□□□□ 0.48
RNF4P78317 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF4P78317 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF4P78317 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
RNF4P78317 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF4P78317 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF4P78317 MIR4785-201ENST00000585005 73 ntBASIC18.02■□□□□ 0.48
RNF4P78317 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF4P78317 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.02■□□□□ 0.48
RNF4P78317 HLA-A-209ENST00000638375 975 ntBASIC18.02■□□□□ 0.48
RNF4P78317 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF4P78317 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
RNF4P78317 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF4P78317 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.02■□□□□ 0.47
RNF4P78317 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.02■□□□□ 0.47
RNF4P78317 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
RNF4P78317 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF4P78317 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
RNF4P78317 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 KRT17P2-201ENST00000300992 1314 ntBASIC18.01■□□□□ 0.47
RNF4P78317 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.01■□□□□ 0.47
RNF4P78317 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
RNF4P78317 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms