Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.05■□□□□ 0.64
SHMT2P34897 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.05■□□□□ 0.64
SHMT2P34897 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SHMT2P34897 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.05■□□□□ 0.64
SHMT2P34897 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 TCF3P1-201ENST00000423021 1937 ntBASIC19.05■□□□□ 0.64
SHMT2P34897 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.05■□□□□ 0.64
SHMT2P34897 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHMT2P34897 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.04■□□□□ 0.64
SHMT2P34897 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SHMT2P34897 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SHMT2P34897 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.04■□□□□ 0.64
SHMT2P34897 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.04■□□□□ 0.64
SHMT2P34897 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.04■□□□□ 0.64
SHMT2P34897 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.04■□□□□ 0.64
SHMT2P34897 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.04■□□□□ 0.64
SHMT2P34897 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.04■□□□□ 0.64
SHMT2P34897 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.04■□□□□ 0.64
SHMT2P34897 AC066615.1-201ENST00000640911 628 ntBASIC19.04■□□□□ 0.64
SHMT2P34897 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.04■□□□□ 0.64
SHMT2P34897 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SHMT2P34897 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHMT2P34897 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 AL135905.2-201ENST00000584934 1404 ntBASIC19.03■□□□□ 0.64
SHMT2P34897 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.03■□□□□ 0.64
SHMT2P34897 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.03■□□□□ 0.64
SHMT2P34897 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.03■□□□□ 0.64
SHMT2P34897 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 RARRES2P10-201ENST00000564312 460 ntBASIC19.03■□□□□ 0.64
SHMT2P34897 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.03■□□□□ 0.64
SHMT2P34897 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.03■□□□□ 0.64
SHMT2P34897 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.03■□□□□ 0.64
SHMT2P34897 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.03■□□□□ 0.64
SHMT2P34897 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SHMT2P34897 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHMT2P34897 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SHMT2P34897 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.02■□□□□ 0.64
SHMT2P34897 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SHMT2P34897 MIR718-201ENST00000390190 70 ntBASIC19.02■□□□□ 0.64
SHMT2P34897 KRT18P16-201ENST00000510337 1294 ntBASIC19.02■□□□□ 0.64
SHMT2P34897 AC008550.1-201ENST00000511500 884 ntBASIC19.02■□□□□ 0.64
SHMT2P34897 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.02■□□□□ 0.64
SHMT2P34897 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms