Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 AC069152.1-201ENST00000438030 544 ntBASIC14.81□□□□□ -0.04
HLA-DMBP28068 OR2A1-AS1-201ENST00000462305 773 ntBASIC14.81□□□□□ -0.04
HLA-DMBP28068 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 MIR4758-201ENST00000577688 71 ntBASIC14.81□□□□□ -0.04
HLA-DMBP28068 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 AC093503.3-201ENST00000624917 2352 ntBASIC14.8□□□□□ -0.04
HLA-DMBP28068 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MIPEPP3-201ENST00000412105 444 ntBASIC14.8□□□□□ -0.04
HLA-DMBP28068 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MARS-234ENST00000630571 216 ntTSL 5 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MARS-235ENST00000630803 183 ntTSL 3 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.8□□□□□ -0.04
HLA-DMBP28068 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DMBP28068 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 CD99P1-205ENST00000527459 561 ntBASIC14.79□□□□□ -0.04
HLA-DMBP28068 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HLA-DMBP28068 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DMBP28068 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-DMBP28068 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-DMBP28068 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DMBP28068 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms