Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXC4P09017 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 RCN1P1-201ENST00000400413 996 ntBASIC19.03■□□□□ 0.64
HOXC4P09017 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXC4P09017 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXC4P09017 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.03■□□□□ 0.64
HOXC4P09017 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXC4P09017 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC4P09017 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.02■□□□□ 0.64
HOXC4P09017 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXC4P09017 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXC4P09017 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC4P09017 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC4P09017 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC4P09017 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HOXC4P09017 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC4P09017 SLC25A1P2-201ENST00000430693 912 ntBASIC19.02■□□□□ 0.64
HOXC4P09017 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.02■□□□□ 0.64
HOXC4P09017 AC128688.1-201ENST00000487626 519 ntBASIC19.02■□□□□ 0.64
HOXC4P09017 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.02■□□□□ 0.64
HOXC4P09017 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
HOXC4P09017 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.02■□□□□ 0.64
HOXC4P09017 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HOXC4P09017 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HOXC4P09017 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
HOXC4P09017 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HOXC4P09017 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.02■□□□□ 0.63
HOXC4P09017 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.02■□□□□ 0.63
HOXC4P09017 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.02■□□□□ 0.63
HOXC4P09017 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC4P09017 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 PKD1P6-201ENST00000343738 4769 ntBASIC19.01■□□□□ 0.63
HOXC4P09017 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
HOXC4P09017 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
HOXC4P09017 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC4P09017 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.01■□□□□ 0.63
HOXC4P09017 CA15P1-201ENST00000481698 905 ntBASIC19.01■□□□□ 0.63
HOXC4P09017 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.01■□□□□ 0.63
HOXC4P09017 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
HOXC4P09017 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HOXC4P09017 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC4P09017 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HOXC4P09017 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 LINC01465-201ENST00000408887 1940 ntBASIC19.01■□□□□ 0.63
HOXC4P09017 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC4P09017 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC4P09017 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 AC113347.1-201ENST00000413321 391 ntBASIC19■□□□□ 0.63
HOXC4P09017 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 CKBP1-201ENST00000565489 1086 ntBASIC19■□□□□ 0.63
HOXC4P09017 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19■□□□□ 0.63
HOXC4P09017 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19■□□□□ 0.63
HOXC4P09017 AC092865.7-201ENST00000641832 219 ntBASIC19■□□□□ 0.63
HOXC4P09017 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 AC104417.2-201ENST00000562989 1793 ntBASIC19■□□□□ 0.63
HOXC4P09017 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19■□□□□ 0.63
HOXC4P09017 ZNF815P-204ENST00000434898 1737 ntBASIC19■□□□□ 0.63
HOXC4P09017 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC4P09017 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19■□□□□ 0.63
HOXC4P09017 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HOXC4P09017 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms