Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC24.61■■□□□ 1.53
CACNA1FO60840 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 LINC01465-201ENST00000408887 1940 ntBASIC24.61■■□□□ 1.53
CACNA1FO60840 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
CACNA1FO60840 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
CACNA1FO60840 PWWP2AP1-201ENST00000429776 2273 ntBASIC24.6■■□□□ 1.53
CACNA1FO60840 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC24.6■■□□□ 1.53
CACNA1FO60840 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
CACNA1FO60840 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC24.6■■□□□ 1.53
CACNA1FO60840 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC24.6■■□□□ 1.53
CACNA1FO60840 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 TP73-202ENST00000354437 2140 ntTSL 5 BASIC24.6■■□□□ 1.53
CACNA1FO60840 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CACNA1FO60840 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
CACNA1FO60840 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.59■■□□□ 1.53
CACNA1FO60840 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
CACNA1FO60840 GOLGA6L5P-202ENST00000515341 1828 ntBASIC24.59■■□□□ 1.53
CACNA1FO60840 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC24.59■■□□□ 1.53
CACNA1FO60840 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.59■■□□□ 1.53
CACNA1FO60840 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC24.59■■□□□ 1.53
CACNA1FO60840 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC24.59■■□□□ 1.53
CACNA1FO60840 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC24.59■■□□□ 1.53
CACNA1FO60840 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
CACNA1FO60840 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC24.59■■□□□ 1.53
CACNA1FO60840 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CACNA1FO60840 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
CACNA1FO60840 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC24.59■■□□□ 1.53
CACNA1FO60840 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.58■■□□□ 1.53
CACNA1FO60840 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CACNA1FO60840 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.58■■□□□ 1.53
CACNA1FO60840 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CACNA1FO60840 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC24.58■■□□□ 1.53
CACNA1FO60840 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.58■■□□□ 1.53
CACNA1FO60840 AC012306.2-201ENST00000609350 630 ntBASIC24.58■■□□□ 1.53
CACNA1FO60840 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
CACNA1FO60840 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC24.58■■□□□ 1.53
CACNA1FO60840 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.58■■□□□ 1.53
CACNA1FO60840 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CACNA1FO60840 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CACNA1FO60840 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CACNA1FO60840 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CACNA1FO60840 AC097488.1-201ENST00000507834 756 ntBASIC24.58■■□□□ 1.52
CACNA1FO60840 PRSS44-201ENST00000515154 1146 ntBASIC24.58■■□□□ 1.52
CACNA1FO60840 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.58■■□□□ 1.52
CACNA1FO60840 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC24.58■■□□□ 1.52
CACNA1FO60840 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CACNA1FO60840 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.58■■□□□ 1.52
CACNA1FO60840 AL158211.5-201ENST00000623583 2518 ntBASIC24.58■■□□□ 1.52
CACNA1FO60840 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.52
CACNA1FO60840 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CACNA1FO60840 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1FO60840 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1FO60840 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC24.57■■□□□ 1.52
CACNA1FO60840 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1FO60840 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC24.57■■□□□ 1.52
CACNA1FO60840 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC24.57■■□□□ 1.52
CACNA1FO60840 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.57■■□□□ 1.52
CACNA1FO60840 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1FO60840 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
CACNA1FO60840 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 AC087499.1-201ENST00000418141 1075 ntBASIC24.56■■□□□ 1.52
CACNA1FO60840 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
CACNA1FO60840 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1FO60840 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.56■■□□□ 1.52
CACNA1FO60840 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 LINC01023-201ENST00000606054 436 ntBASIC24.56■■□□□ 1.52
CACNA1FO60840 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC24.56■■□□□ 1.52
CACNA1FO60840 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.56■■□□□ 1.52
CACNA1FO60840 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.56■■□□□ 1.52
CACNA1FO60840 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC24.55■■□□□ 1.52
CACNA1FO60840 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC24.55■■□□□ 1.52
CACNA1FO60840 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms