Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB3O15347 AC116050.2-201ENST00000612102 1779 ntBASIC15.65■□□□□ 0.1
HMGB3O15347 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HMGB3O15347 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB3O15347 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB3O15347 AC245052.3-201ENST00000450182 901 ntBASIC15.65■□□□□ 0.1
HMGB3O15347 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB3O15347 AC008175.2-201ENST00000612840 297 ntBASIC15.65■□□□□ 0.1
HMGB3O15347 AC104581.1-202ENST00000635932 2618 ntBASIC15.65■□□□□ 0.1
HMGB3O15347 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HMGB3O15347 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB3O15347 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB3O15347 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 LTB4R2-202ENST00000528054 3092 ntBASIC15.64■□□□□ 0.09
HMGB3O15347 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC15.64■□□□□ 0.09
HMGB3O15347 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC15.64■□□□□ 0.09
HMGB3O15347 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 MIR4767-201ENST00000582827 78 ntBASIC15.64■□□□□ 0.09
HMGB3O15347 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
HMGB3O15347 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB3O15347 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB3O15347 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB3O15347 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.63■□□□□ 0.09
HMGB3O15347 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.63■□□□□ 0.09
HMGB3O15347 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HMGB3O15347 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
HMGB3O15347 LHPP-203ENST00000392757 840 ntTSL 3 BASIC15.63■□□□□ 0.09
HMGB3O15347 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.63■□□□□ 0.09
HMGB3O15347 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HMGB3O15347 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC15.63■□□□□ 0.09
HMGB3O15347 AC233992.3-201ENST00000607491 485 ntBASIC15.63■□□□□ 0.09
HMGB3O15347 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
HMGB3O15347 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
HMGB3O15347 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.63■□□□□ 0.09
HMGB3O15347 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB3O15347 LINC01465-201ENST00000408887 1940 ntBASIC15.62■□□□□ 0.09
HMGB3O15347 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
HMGB3O15347 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HMGB3O15347 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms