Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 AP006294.2-201ENST00000641667 209 ntBASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV41A0A0B4J266 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
TRAV41A0A0B4J266 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AL353807.1-201ENST00000427475 662 ntBASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 C1QL1P1-201ENST00000568105 661 ntBASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 HTR7P1-201ENST00000538670 1336 ntBASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 AL135905.2-201ENST00000584934 1404 ntBASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV41A0A0B4J266 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 AP002982.1-201ENST00000492365 877 ntBASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 RARRES2P10-201ENST00000564312 460 ntBASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms