Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AC126544.1-201ENST00000580842 1059 ntBASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AL031963.3-201ENST00000606441 850 ntBASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AL162741.1-201ENST00000565563 1558 ntBASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 PTMA-205ENST00000410064 814 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV1-1A0A0B4J248 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 AC087633.2-202ENST00000565166 1439 ntBASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 AC097381.1-201ENST00000429019 1296 ntBASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 PHGDH-210ENST00000641115 1638 ntBASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 AC090340.1-201ENST00000620778 4980 ntBASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV1-1A0A0B4J248 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 ESPNP-201ENST00000270691 2015 ntBASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV1-1A0A0B4J248 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms