Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 AC013488.1-201ENST00000526618 1838 ntBASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
TRIM35Q9UPQ4 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 FAM32BP-201ENST00000344033 333 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 SNORA20.1-201ENST00000364790 130 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 RNA5SP172-201ENST00000365061 118 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 RNU4-6P-201ENST00000410804 122 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 PGBD4P6-201ENST00000421501 610 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 WDR95P-201ENST00000425638 1542 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AL132765.1-201ENST00000434165 553 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 IPO7P2-201ENST00000451446 1750 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 PRELID3BP1-201ENST00000457142 540 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 RPL34P34-201ENST00000465389 354 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AC025465.3-201ENST00000510570 311 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 Y_RNA.703-201ENST00000516846 111 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 RN7SKP147-201ENST00000517154 244 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 FAU-203ENST00000525297 355 ntTSL 5 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AL109628.1-201ENST00000556877 366 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AC104695.3-201ENST00000604052 296 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 AC011471.4-201ENST00000638271 216 ntBASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
TRIM35Q9UPQ4 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RPL23AP57-201ENST00000332361 466 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RNU6-1066P-201ENST00000363573 105 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RNU6-1017P-201ENST00000363613 106 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 SAR1AP2-201ENST00000392696 594 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RN7SKP268-201ENST00000411107 316 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 PSMD8P1-201ENST00000436275 769 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RPS15AP9-201ENST00000439856 381 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 RPL7P22-201ENST00000466005 733 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 IGLVV-66-201ENST00000523818 341 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AL133338.2-201ENST00000604292 736 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC015967.1-201ENST00000619893 476 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC005858.3-201ENST00000624756 589 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC069542.2-201ENST00000624816 216 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 AC009237.3-203ENST00000442128 3551 ntBASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC9.17□□□□□ -0.94
TRIM35Q9UPQ4 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 AL359396.1-201ENST00000623151 2376 ntBASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 AL359263.1-201ENST00000441188 2796 ntBASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC9.16□□□□□ -0.94
TRIM35Q9UPQ4 Y_RNA.150-201ENST00000363562 102 ntBASIC9.16□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms