RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MYT1Q01538 1121 aa13.39□□□□□ -0.27
LIMCH1-201ENST00000313860 PELP1Q8IZL8 1130 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-201ENST00000313860 ERICH6Q7L0X2 663 aa12.82□□□□□ -0.36
LIMCH1-201ENST00000313860 CCER1Q8TC90 406 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-201ENST00000313860 TTBK1Q5TCY1 1321 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-201ENST00000313860 RANGAP1P46060 587 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-201ENST00000313860 YTHDC1Q96MU7 727 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-201ENST00000313860 DAXXQ9UER7 740 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-201ENST00000313860 CENPBP07199 599 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-201ENST00000313860 NEFLP07196 543 aa11.64□□□□□ -0.55
LIMCH1-201ENST00000313860 EIF5BO60841 1220 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-201ENST00000313860 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
LIMCH1-201ENST00000313860 RTL5Q5HYW3 569 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-201ENST00000313860 ZNF316A6NFI3 1004 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-201ENST00000313860 GLIPR1L2Q4G1C9 344 aa11.42□□□□□ -0.58
LIMCH1-201ENST00000313860 DCAF8L2P0C7V8 631 aa11.36□□□□□ -0.59
LIMCH1-201ENST00000313860 MYT1LQ9UL68 1186 aa11.32□□□□□ -0.6
LIMCH1-201ENST00000313860 POLR3GLQ9BT43 218 aa11.29□□□□□ -0.6
LIMCH1-201ENST00000313860 AMER1Q5JTC6 1135 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-201ENST00000313860 CLSPNQ9HAW4 1339 aa11.21□□□□□ -0.61
LIMCH1-201ENST00000313860 PCGF6Q9BYE7 350 aa11.16□□□□□ -0.62
LIMCH1-201ENST00000313860 APLP2Q06481 763 aa11.12□□□□□ -0.63
LIMCH1-201ENST00000313860 SUPT5HO00267 1087 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-201ENST00000313860 CDK11BP21127 795 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-201ENST00000313860 CNGB1Q14028 1251 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-201ENST00000313860 BCL11AQ9H165 835 aa10.99□□□□□ -0.65
LIMCH1-201ENST00000313860 TNNT2P45379 298 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-201ENST00000313860 ANP32BQ92688 251 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-201ENST00000313860 ZNF326Q5BKZ1 582 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-201ENST00000313860 ARXQ96QS3 562 aa10.88□□□□□ -0.67
LIMCH1-201ENST00000313860 CALRP27797 417 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-201ENST00000313860 BCANQ96GW7 911 aa10.83□□□□□ -0.68
LIMCH1-201ENST00000313860 CDK11AQ9UQ88 783 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-201ENST00000313860 NISCHQ9Y2I1 1504 aa10.8□□□□□ -0.68
LIMCH1-201ENST00000313860 FAM9AQ8IZU1 332 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-201ENST00000313860 SLC4A1APQ9BWU0 796 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-201ENST00000313860 ZBTB47Q9UFB7 747 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-201ENST00000313860 NPM2Q86SE8 214 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-201ENST00000313860 ZEB1P37275 1124 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-201ENST00000313860 NCBP3Q53F19 620 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-201ENST00000313860 TRIM44Q96DX7 344 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-201ENST00000313860 ATP1B4Q9UN42 357 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-201ENST00000313860 NCLP19338 710 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-201ENST00000313860 SLC24A1O60721 1099 aa10.64□□□□□ -0.71
LIMCH1-201ENST00000313860 NBR1Q14596 966 aa10.64□□□□□ -0.71
LIMCH1-201ENST00000313860 APPP05067 770 aa10.63□□□□□ -0.71
LIMCH1-201ENST00000313860 SHROOM4Q9ULL8 1493 aa10.63□□□□□ -0.71
LIMCH1-201ENST00000313860 CHIC1Q5VXU3 224 aa10.62□□□□□ -0.71
LIMCH1-201ENST00000313860 TULP1O00294 542 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-201ENST00000313860 ANP32AP39687 249 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-201ENST00000313860 HSP90AA1P07900 732 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-201ENST00000313860 RTN4Q9NQC3 1192 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-201ENST00000313860 MEX3CQ5U5Q3 659 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-201ENST00000313860 NAP1L5Q96NT1 182 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-201ENST00000313860 TNNT3P45378 269 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-201ENST00000313860 DNTTIP2Q5QJE6 756 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-201ENST00000313860 A0A0U1RQG5 324 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-201ENST00000313860 CANXP27824 592 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-201ENST00000313860 ARID4BQ4LE39 1312 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-201ENST00000313860 PPARGC1BQ86YN6 1023 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-201ENST00000313860 ARID3AQ99856 593 aa10.45□□□□□ -0.74
LIMCH1-201ENST00000313860 GTF3C3Q9Y5Q9 886 aa10.44□□□□□ -0.74
LIMCH1-201ENST00000313860 PRM3Q9NNZ6 103 aa10.43□□□□□ -0.74
LIMCH1-201ENST00000313860 HRCP23327 699 aa10.41□□□□□ -0.74
LIMCH1-201ENST00000313860 FBXO3Q9UK99 471 aa10.4□□□□□ -0.74
LIMCH1-201ENST00000313860 TPRNQ4KMQ1 711 aa10.4□□□□□ -0.75
LIMCH1-201ENST00000313860 TAF7LQ5H9L4 462 aa10.39□□□□□ -0.75
LIMCH1-201ENST00000313860 PTMAP06454 111 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-201ENST00000313860 PTMSP20962 102 aa10.34□□□□□ -0.75
LIMCH1-201ENST00000313860 HAP1P54257 671 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-201ENST00000313860 STK11IPQ8N1F8 1099 aa10.33□□□□□ -0.76
LIMCH1-201ENST00000313860 PATL2C9JE40 543 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-201ENST00000313860 GOLGA6L22H0YM25 854 aa10.32□□□□□ -0.76
LIMCH1-201ENST00000313860 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-201ENST00000313860 NEFMP07197 916 aa10.3□□□□□ -0.76
LIMCH1-201ENST00000313860 ZBTB7CA1YPR0 619 aa10.29□□□□□ -0.76
LIMCH1-201ENST00000313860 ANP32EQ9BTT0 268 aa10.27□□□□□ -0.76
LIMCH1-201ENST00000313860 NOC3LQ8WTT2 800 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-201ENST00000313860 CCDC136Q96JN2 1154 aa10.26□□□□□ -0.77
LIMCH1-201ENST00000313860 UPF2Q9HAU5 1272 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-201ENST00000313860 ITGAEP38570 1179 aa10.25□□□□□ -0.77
LIMCH1-201ENST00000313860 PLCB2Q00722 1185 aa10.24□□□□□ -0.77
LIMCH1-201ENST00000313860 DIEXFQ68CQ4 756 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-201ENST00000313860 PDE4CQ08493 712 aa10.23□□□□□ -0.77
LIMCH1-201ENST00000313860 CLSTN1O94985 981 aa10.22□□□□□ -0.77
LIMCH1-201ENST00000313860 SETQ01105 290 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-201ENST00000313860 ZRSR1Q15695 479 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-201ENST00000313860 ERICH6BQ5W0A0 696 aa10.2□□□□□ -0.78
LIMCH1-201ENST00000313860 PODXL2Q9NZ53 605 aa10.19□□□□□ -0.78
LIMCH1-201ENST00000313860 ZNF526Q8TF50 670 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-201ENST00000313860 TAOK2Q9UL54 1235 aa10.18□□□□□ -0.78
LIMCH1-201ENST00000313860 GOLGA6L1Q8N7Z2 621 aa10.14□□□□□ -0.79
LIMCH1-201ENST00000313860 BCCIPQ9P287 314 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMCH1-201ENST00000313860 CHAF1AQ13111 956 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-201ENST00000313860 ANO8Q9HCE9 1232 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-201ENST00000313860 NEFHP12036 1026 aa10.1□□□□□ -0.79
LIMCH1-201ENST00000313860 VSIG10Q8N0Z9 540 aa10.1□□□□□ -0.79
LIMCH1-201ENST00000313860 PNNQ9H307 717 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-201ENST00000313860 GOLGA6L6A8MZA4 724 aa10.09□□□□□ -0.79
LIMCH1-201ENST00000313860 TRIM26Q12899 539 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms