Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
FOXC2Q99958 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
FOXC2Q99958 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXC2Q99958 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.45■□□□□ 0.22
FOXC2Q99958 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXC2Q99958 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXC2Q99958 KRT18P38-201ENST00000449496 1282 ntBASIC16.44■□□□□ 0.22
FOXC2Q99958 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 RN7SL510P-201ENST00000581311 263 ntBASIC16.44■□□□□ 0.22
FOXC2Q99958 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
FOXC2Q99958 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
FOXC2Q99958 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.44■□□□□ 0.22
FOXC2Q99958 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
FOXC2Q99958 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXC2Q99958 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.44■□□□□ 0.22
FOXC2Q99958 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.43■□□□□ 0.22
FOXC2Q99958 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 AC004870.1-201ENST00000315132 882 ntBASIC16.43■□□□□ 0.22
FOXC2Q99958 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXC2Q99958 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
FOXC2Q99958 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXC2Q99958 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXC2Q99958 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
FOXC2Q99958 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.43■□□□□ 0.22
FOXC2Q99958 HLA-A-209ENST00000638375 975 ntBASIC16.43■□□□□ 0.22
FOXC2Q99958 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXC2Q99958 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
FOXC2Q99958 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXC2Q99958 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXC2Q99958 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXC2Q99958 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXC2Q99958 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
FOXC2Q99958 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXC2Q99958 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXC2Q99958 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 FAAHP1-202ENST00000446499 1238 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 AC112907.2-201ENST00000448639 330 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXC2Q99958 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXC2Q99958 PRELID1P1-202ENST00000567272 903 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 AC111152.3-201ENST00000569699 673 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 MIR3652-201ENST00000579335 131 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXC2Q99958 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.42■□□□□ 0.22
FOXC2Q99958 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.42■□□□□ 0.22
FOXC2Q99958 CR769767.2-201ENST00000622735 460 ntBASIC16.42■□□□□ 0.22
FOXC2Q99958 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
FOXC2Q99958 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.42■□□□□ 0.22
FOXC2Q99958 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms