Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 AL390719.1-204ENST00000412397 1219 ntBASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 AL121832.2-201ENST00000610979 668 ntBASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 AC006557.6-201ENST00000623071 864 ntBASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 AC138932.1-201ENST00000534164 6830 ntBASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLHC1Q8NHS4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLHC1Q8NHS4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CLHC1Q8NHS4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.66■□□□□ 0.58
CLHC1Q8NHS4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms