Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 AC104187.1-201ENST00000607510 612 ntBASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
ZNF540Q8NDQ6 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
ZNF540Q8NDQ6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 AC231657.2-201ENST00000624556 255 ntBASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ZNF540Q8NDQ6 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 AC120498.10-201ENST00000621827 505 ntBASIC18■□□□□ 0.47
ZNF540Q8NDQ6 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18■□□□□ 0.47
ZNF540Q8NDQ6 CROCCP3-202ENST00000420820 1947 ntBASIC18■□□□□ 0.47
ZNF540Q8NDQ6 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms