Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 AC022616.5-201ENST00000518796 181 ntBASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 DUX4L18-201ENST00000553347 1267 ntBASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 AC068418.2-201ENST00000577309 3703 ntBASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN3Q8NCR9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ESPNP-201ENST00000270691 2015 ntBASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN3Q8NCR9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 BX005040.4-201ENST00000637145 1518 ntBASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 AC080080.1-201ENST00000625121 2420 ntBASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 AL499627.2-201ENST00000606283 725 ntBASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms