Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 AC093484.2-201ENST00000580996 2166 ntBASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 AP001271.2-201ENST00000624018 1556 ntBASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 AC083906.2-201ENST00000511578 360 ntBASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP4Q8N3C7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP4Q8N3C7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 MIPEPP3-201ENST00000412105 444 ntBASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP4Q8N3C7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
CLIP4Q8N3C7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLIP4Q8N3C7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CLIP4Q8N3C7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLIP4Q8N3C7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 AC006970.2-201ENST00000450065 779 ntBASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 AL121832.2-201ENST00000610979 668 ntBASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP4Q8N3C7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms