Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.12■□□□□ 0.49
RFX4Q33E94 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
RFX4Q33E94 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
RFX4Q33E94 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.12■□□□□ 0.49
RFX4Q33E94 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RFX4Q33E94 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
RFX4Q33E94 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RFX4Q33E94 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
RFX4Q33E94 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX4Q33E94 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX4Q33E94 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX4Q33E94 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
RFX4Q33E94 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RFX4Q33E94 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.11■□□□□ 0.49
RFX4Q33E94 AL162412.1-201ENST00000567129 965 ntBASIC18.11■□□□□ 0.49
RFX4Q33E94 NTF6G-201ENST00000591094 616 ntBASIC18.11■□□□□ 0.49
RFX4Q33E94 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
RFX4Q33E94 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 PTBP1P-201ENST00000554374 1601 ntBASIC18.11■□□□□ 0.49
RFX4Q33E94 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RFX4Q33E94 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RFX4Q33E94 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX4Q33E94 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RFX4Q33E94 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 AL390961.4-201ENST00000623958 2535 ntBASIC18.1■□□□□ 0.49
RFX4Q33E94 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.1■□□□□ 0.49
RFX4Q33E94 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.1■□□□□ 0.49
RFX4Q33E94 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.1■□□□□ 0.49
RFX4Q33E94 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RFX4Q33E94 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.1■□□□□ 0.49
RFX4Q33E94 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RFX4Q33E94 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
RFX4Q33E94 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.1■□□□□ 0.49
RFX4Q33E94 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 AC135050.7-201ENST00000624508 2218 ntBASIC18.1■□□□□ 0.49
RFX4Q33E94 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX4Q33E94 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.09■□□□□ 0.49
RFX4Q33E94 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.09■□□□□ 0.49
RFX4Q33E94 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RFX4Q33E94 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.09■□□□□ 0.49
RFX4Q33E94 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.09■□□□□ 0.49
RFX4Q33E94 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms