Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LIM2P55344 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.52■□□□□ 0.56
LIM2P55344 AC133681.1-201ENST00000465482 601 ntBASIC18.52■□□□□ 0.56
LIM2P55344 RPPH1-201ENST00000516869 333 ntBASIC18.52■□□□□ 0.56
LIM2P55344 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.52■□□□□ 0.56
LIM2P55344 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.52■□□□□ 0.56
LIM2P55344 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.52■□□□□ 0.56
LIM2P55344 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIM2P55344 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIM2P55344 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIM2P55344 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.52■□□□□ 0.55
LIM2P55344 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
LIM2P55344 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LIM2P55344 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.51■□□□□ 0.55
LIM2P55344 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 TREX1-205ENST00000625293 1783 ntBASIC18.51■□□□□ 0.55
LIM2P55344 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.51■□□□□ 0.55
LIM2P55344 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
LIM2P55344 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.51■□□□□ 0.55
LIM2P55344 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.51■□□□□ 0.55
LIM2P55344 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIM2P55344 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
LIM2P55344 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.5■□□□□ 0.55
LIM2P55344 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.5■□□□□ 0.55
LIM2P55344 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.5■□□□□ 0.55
LIM2P55344 KRT18P16-201ENST00000510337 1294 ntBASIC18.5■□□□□ 0.55
LIM2P55344 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.5■□□□□ 0.55
LIM2P55344 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.5■□□□□ 0.55
LIM2P55344 AC110285.5-201ENST00000611501 352 ntBASIC18.5■□□□□ 0.55
LIM2P55344 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.5■□□□□ 0.55
LIM2P55344 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.5■□□□□ 0.55
LIM2P55344 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.5■□□□□ 0.55
LIM2P55344 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.5■□□□□ 0.55
LIM2P55344 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIM2P55344 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
LIM2P55344 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.49■□□□□ 0.55
LIM2P55344 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.49■□□□□ 0.55
LIM2P55344 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 AC098590.1-201ENST00000468126 897 ntBASIC18.49■□□□□ 0.55
LIM2P55344 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIM2P55344 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIM2P55344 AC004264.1-201ENST00000608354 794 ntBASIC18.49■□□□□ 0.55
LIM2P55344 AL359736.2-201ENST00000621992 437 ntBASIC18.49■□□□□ 0.55
LIM2P55344 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.49■□□□□ 0.55
LIM2P55344 TMEM191A-211ENST00000637163 1067 ntBASIC18.49■□□□□ 0.55
LIM2P55344 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.49■□□□□ 0.55
LIM2P55344 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIM2P55344 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.49■□□□□ 0.55
LIM2P55344 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.49■□□□□ 0.55
LIM2P55344 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.49■□□□□ 0.55
LIM2P55344 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIM2P55344 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LIM2P55344 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LIM2P55344 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.48■□□□□ 0.55
LIM2P55344 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
LIM2P55344 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms