Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.56■■□□□ 1.36
COL1A1P02452 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.56■■□□□ 1.36
COL1A1P02452 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
COL1A1P02452 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
COL1A1P02452 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.56■■□□□ 1.36
COL1A1P02452 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 CRYGFP-201ENST00000418459 633 ntBASIC23.56■■□□□ 1.36
COL1A1P02452 LIN28AP1-201ENST00000429574 405 ntBASIC23.56■■□□□ 1.36
COL1A1P02452 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.56■■□□□ 1.36
COL1A1P02452 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.56■■□□□ 1.36
COL1A1P02452 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL1A1P02452 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC23.56■■□□□ 1.36
COL1A1P02452 AC130371.2-201ENST00000619443 611 ntBASIC23.56■■□□□ 1.36
COL1A1P02452 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL1A1P02452 KRT8P41-201ENST00000533985 1514 ntBASIC23.55■■□□□ 1.36
COL1A1P02452 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.55■■□□□ 1.36
COL1A1P02452 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.55■■□□□ 1.36
COL1A1P02452 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.55■■□□□ 1.36
COL1A1P02452 MFAP1P1-201ENST00000442257 1255 ntBASIC23.55■■□□□ 1.36
COL1A1P02452 AC022616.7-201ENST00000525383 220 ntBASIC23.55■■□□□ 1.36
COL1A1P02452 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC23.55■■□□□ 1.36
COL1A1P02452 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
COL1A1P02452 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL1A1P02452 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
COL1A1P02452 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
COL1A1P02452 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
COL1A1P02452 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.54■■□□□ 1.36
COL1A1P02452 AC128688.1-201ENST00000487626 519 ntBASIC23.54■■□□□ 1.36
COL1A1P02452 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
COL1A1P02452 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.54■■□□□ 1.36
COL1A1P02452 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL1A1P02452 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.53■■□□□ 1.36
COL1A1P02452 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.53■■□□□ 1.36
COL1A1P02452 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
COL1A1P02452 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
COL1A1P02452 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC23.53■■□□□ 1.36
COL1A1P02452 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC23.53■■□□□ 1.36
COL1A1P02452 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC23.53■■□□□ 1.36
COL1A1P02452 FAM207BP-201ENST00000447172 505 ntBASIC23.53■■□□□ 1.36
COL1A1P02452 ATP5G1P1-201ENST00000448724 379 ntBASIC23.53■■□□□ 1.36
COL1A1P02452 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC23.53■■□□□ 1.36
COL1A1P02452 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC23.53■■□□□ 1.36
COL1A1P02452 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
COL1A1P02452 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL1A1P02452 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL1A1P02452 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 AC112907.3-201ENST00000577781 2400 ntBASIC23.52■■□□□ 1.36
COL1A1P02452 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.52■■□□□ 1.36
COL1A1P02452 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.52■■□□□ 1.36
COL1A1P02452 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.52■■□□□ 1.36
COL1A1P02452 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC23.52■■□□□ 1.36
COL1A1P02452 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL1A1P02452 ECEL1P2-202ENST00000465689 757 ntBASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms