Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 SERBP1P1-201ENST00000396021 1160 ntBASIC14.66□□□□□ -0.06
HLA-DQA1P01909 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 HES6-206ENST00000409574 738 ntTSL 2 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PEMT-206ENST00000435340 960 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.65□□□□□ -0.06
HLA-DQA1P01909 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 AL161938.1-201ENST00000569833 2180 ntBASIC14.64□□□□□ -0.07
HLA-DQA1P01909 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 Z98044.1-201ENST00000632503 1764 ntBASIC14.64□□□□□ -0.07
HLA-DQA1P01909 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.64□□□□□ -0.07
HLA-DQA1P01909 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-DQA1P01909 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms