Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LDLRP01130 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.79■□□□□ 0.6
LDLRP01130 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 POU5F1P4-201ENST00000413175 1085 ntBASIC18.79■□□□□ 0.6
LDLRP01130 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.79■□□□□ 0.6
LDLRP01130 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.79■□□□□ 0.6
LDLRP01130 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.79■□□□□ 0.6
LDLRP01130 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.79■□□□□ 0.6
LDLRP01130 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.79■□□□□ 0.6
LDLRP01130 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 AC010331.1-201ENST00000611423 582 ntBASIC18.79■□□□□ 0.6
LDLRP01130 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 BX119927.1-201ENST00000636596 1552 ntBASIC18.79■□□□□ 0.6
LDLRP01130 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LDLRP01130 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 AC245052.3-201ENST00000450182 901 ntBASIC18.78■□□□□ 0.6
LDLRP01130 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LDLRP01130 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.78■□□□□ 0.6
LDLRP01130 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 AC008175.2-201ENST00000612840 297 ntBASIC18.78■□□□□ 0.6
LDLRP01130 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LDLRP01130 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LDLRP01130 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.78■□□□□ 0.6
LDLRP01130 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LDLRP01130 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDLRP01130 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
LDLRP01130 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
LDLRP01130 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LDLRP01130 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.77■□□□□ 0.6
LDLRP01130 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDLRP01130 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.77■□□□□ 0.6
LDLRP01130 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.77■□□□□ 0.6
LDLRP01130 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.77■□□□□ 0.6
LDLRP01130 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
LDLRP01130 AC120498.10-201ENST00000621827 505 ntBASIC18.77■□□□□ 0.6
LDLRP01130 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
LDLRP01130 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.77■□□□□ 0.6
LDLRP01130 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
LDLRP01130 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LDLRP01130 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDLRP01130 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDLRP01130 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LDLRP01130 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LDLRP01130 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.76■□□□□ 0.59
LDLRP01130 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDLRP01130 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.76■□□□□ 0.59
LDLRP01130 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LDLRP01130 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms