Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.22■□□□□ 0.35
SGCEO43556 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.21■□□□□ 0.35
SGCEO43556 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SGCEO43556 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SGCEO43556 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SGCEO43556 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 TREX1-205ENST00000625293 1783 ntBASIC17.21■□□□□ 0.35
SGCEO43556 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.21■□□□□ 0.35
SGCEO43556 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SGCEO43556 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SGCEO43556 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.21■□□□□ 0.35
SGCEO43556 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.21■□□□□ 0.35
SGCEO43556 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.21■□□□□ 0.35
SGCEO43556 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.21■□□□□ 0.35
SGCEO43556 AL121906.2-201ENST00000621597 723 ntBASIC17.21■□□□□ 0.35
SGCEO43556 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.21■□□□□ 0.35
SGCEO43556 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SGCEO43556 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SGCEO43556 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SGCEO43556 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SGCEO43556 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.2■□□□□ 0.34
SGCEO43556 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.2■□□□□ 0.34
SGCEO43556 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.2■□□□□ 0.34
SGCEO43556 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 TFP1-202ENST00000475455 1573 ntBASIC17.2■□□□□ 0.34
SGCEO43556 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.2■□□□□ 0.34
SGCEO43556 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SGCEO43556 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.2■□□□□ 0.34
SGCEO43556 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.2■□□□□ 0.34
SGCEO43556 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SGCEO43556 AC120498.8-201ENST00000614275 531 ntBASIC17.2■□□□□ 0.34
SGCEO43556 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.2■□□□□ 0.34
SGCEO43556 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SGCEO43556 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.2■□□□□ 0.34
SGCEO43556 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SGCEO43556 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.19■□□□□ 0.34
SGCEO43556 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SGCEO43556 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.19■□□□□ 0.34
SGCEO43556 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.19■□□□□ 0.34
SGCEO43556 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SGCEO43556 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SGCEO43556 AC008687.6-201ENST00000596318 630 ntBASIC17.19■□□□□ 0.34
SGCEO43556 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SGCEO43556 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.19■□□□□ 0.34
SGCEO43556 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SGCEO43556 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SGCEO43556 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms