Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.82■□□□□ 0.76
RIPK2O43353 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.82■□□□□ 0.76
RIPK2O43353 AC023632.3-201ENST00000521633 145 ntBASIC19.82■□□□□ 0.76
RIPK2O43353 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RIPK2O43353 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.82■□□□□ 0.76
RIPK2O43353 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RIPK2O43353 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.82■□□□□ 0.76
RIPK2O43353 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.82■□□□□ 0.76
RIPK2O43353 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.82■□□□□ 0.76
RIPK2O43353 AC005332.8-201ENST00000622750 2735 ntBASIC19.82■□□□□ 0.76
RIPK2O43353 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
RIPK2O43353 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
RIPK2O43353 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RIPK2O43353 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RIPK2O43353 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 WIZP1-201ENST00000531444 2299 ntBASIC19.81■□□□□ 0.76
RIPK2O43353 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RIPK2O43353 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.81■□□□□ 0.76
RIPK2O43353 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RIPK2O43353 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RIPK2O43353 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RIPK2O43353 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.81■□□□□ 0.76
RIPK2O43353 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
RIPK2O43353 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RIPK2O43353 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.8■□□□□ 0.76
RIPK2O43353 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.8■□□□□ 0.76
RIPK2O43353 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 AC090164.3-201ENST00000610780 2143 ntBASIC19.8■□□□□ 0.76
RIPK2O43353 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RIPK2O43353 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.8■□□□□ 0.76
RIPK2O43353 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
RIPK2O43353 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RIPK2O43353 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RIPK2O43353 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.79■□□□□ 0.76
RIPK2O43353 AC018553.1-201ENST00000616682 1458 ntBASIC19.79■□□□□ 0.76
RIPK2O43353 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.79■□□□□ 0.76
RIPK2O43353 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
RIPK2O43353 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.79■□□□□ 0.76
RIPK2O43353 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.79■□□□□ 0.76
RIPK2O43353 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
RIPK2O43353 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.79■□□□□ 0.76
RIPK2O43353 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.79■□□□□ 0.76
RIPK2O43353 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.79■□□□□ 0.76
RIPK2O43353 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.79■□□□□ 0.76
RIPK2O43353 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RIPK2O43353 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms