Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LIME1Q9H400 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC22.59■■□□□ 1.21
LIME1Q9H400 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
LIME1Q9H400 GPX1-201ENST00000419349 1106 ntBASIC22.58■■□□□ 1.21
LIME1Q9H400 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
LIME1Q9H400 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LIME1Q9H400 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LIME1Q9H400 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC22.57■■□□□ 1.2
LIME1Q9H400 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
LIME1Q9H400 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIME1Q9H400 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
LIME1Q9H400 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.55■■□□□ 1.2
LIME1Q9H400 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.55■■□□□ 1.2
LIME1Q9H400 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
LIME1Q9H400 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIME1Q9H400 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIME1Q9H400 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LIME1Q9H400 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.54■■□□□ 1.2
LIME1Q9H400 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIME1Q9H400 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LIME1Q9H400 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.54■■□□□ 1.2
LIME1Q9H400 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
LIME1Q9H400 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.53■■□□□ 1.2
LIME1Q9H400 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LIME1Q9H400 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LIME1Q9H400 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LIME1Q9H400 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
LIME1Q9H400 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.51■■□□□ 1.19
LIME1Q9H400 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LIME1Q9H400 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
LIME1Q9H400 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LIME1Q9H400 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LIME1Q9H400 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
LIME1Q9H400 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LIME1Q9H400 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.48■■□□□ 1.19
LIME1Q9H400 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIME1Q9H400 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIME1Q9H400 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIME1Q9H400 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.48■■□□□ 1.19
LIME1Q9H400 RNF126P1-201ENST00000567452 1320 ntBASIC22.48■■□□□ 1.19
LIME1Q9H400 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIME1Q9H400 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIME1Q9H400 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LIME1Q9H400 ST7-AS1-201ENST00000456775 1889 ntBASIC22.47■■□□□ 1.19
LIME1Q9H400 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
LIME1Q9H400 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LIME1Q9H400 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LIME1Q9H400 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.47■■□□□ 1.19
LIME1Q9H400 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.47■■□□□ 1.19
LIME1Q9H400 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.47■■□□□ 1.19
LIME1Q9H400 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
LIME1Q9H400 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
LIME1Q9H400 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.46■■□□□ 1.19
LIME1Q9H400 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
LIME1Q9H400 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.45■■□□□ 1.18
LIME1Q9H400 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
LIME1Q9H400 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LIME1Q9H400 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
LIME1Q9H400 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
LIME1Q9H400 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.44■■□□□ 1.18
LIME1Q9H400 AL161658.1-201ENST00000623641 1967 ntBASIC22.44■■□□□ 1.18
LIME1Q9H400 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LIME1Q9H400 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
LIME1Q9H400 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
LIME1Q9H400 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
LIME1Q9H400 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
LIME1Q9H400 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
LIME1Q9H400 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.41■■□□□ 1.18
LIME1Q9H400 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LIME1Q9H400 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.41■■□□□ 1.18
LIME1Q9H400 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LIME1Q9H400 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.4■■□□□ 1.18
LIME1Q9H400 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LIME1Q9H400 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LIME1Q9H400 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LIME1Q9H400 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
LIME1Q9H400 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.38■■□□□ 1.17
LIME1Q9H400 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
LIME1Q9H400 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LIME1Q9H400 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LIME1Q9H400 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LIME1Q9H400 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
LIME1Q9H400 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LIME1Q9H400 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.36■■□□□ 1.17
LIME1Q9H400 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LIME1Q9H400 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LIME1Q9H400 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.35■■□□□ 1.17
LIME1Q9H400 NTF6A-201ENST00000591175 560 ntBASIC22.35■■□□□ 1.17
LIME1Q9H400 AC022413.1-201ENST00000624602 984 ntBASIC22.35■■□□□ 1.17
LIME1Q9H400 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
LIME1Q9H400 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LIME1Q9H400 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LIME1Q9H400 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
LIME1Q9H400 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LIME1Q9H400 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LIME1Q9H400 AC012354.3-201ENST00000623734 483 ntBASIC22.33■■□□□ 1.17
LIME1Q9H400 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.33■■□□□ 1.16
LIME1Q9H400 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.33■■□□□ 1.16
LIME1Q9H400 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
LIME1Q9H400 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms