Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
CCDC140Q96MF4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC140Q96MF4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC140Q96MF4 AC100797.4-201ENST00000631653 1827 ntBASIC19.9■□□□□ 0.78
CCDC140Q96MF4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 AC021231.2-201ENST00000594613 730 ntBASIC19.9■□□□□ 0.78
CCDC140Q96MF4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC140Q96MF4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC140Q96MF4 DUX4L29-201ENST00000425409 679 ntBASIC19.89■□□□□ 0.77
CCDC140Q96MF4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC140Q96MF4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC140Q96MF4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC140Q96MF4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC140Q96MF4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC140Q96MF4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC140Q96MF4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC140Q96MF4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC140Q96MF4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 AC142086.6-201ENST00000621154 1765 ntBASIC19.85■□□□□ 0.77
CCDC140Q96MF4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC140Q96MF4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC140Q96MF4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC140Q96MF4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC140Q96MF4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC140Q96MF4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC140Q96MF4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC140Q96MF4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC140Q96MF4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC140Q96MF4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.83■□□□□ 0.76
CCDC140Q96MF4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC140Q96MF4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC140Q96MF4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC140Q96MF4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC140Q96MF4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC140Q96MF4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC140Q96MF4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC140Q96MF4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CCDC140Q96MF4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC140Q96MF4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC140Q96MF4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC140Q96MF4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC140Q96MF4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC140Q96MF4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC140Q96MF4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC140Q96MF4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC140Q96MF4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC140Q96MF4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC140Q96MF4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC140Q96MF4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC140Q96MF4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC140Q96MF4 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC140Q96MF4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC140Q96MF4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC140Q96MF4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC140Q96MF4 AP002414.2-202ENST00000590929 1450 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms